SMTL ID : 6hjj.1

Crystal structure of Aurora-A L210C catalytic domain in complex with ASDO6 ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

1 x G7T: ~{N}-[4-(4-azanyl-1-propan-2-yl-pyrazolo[3,4-d]pyrimidin-3-yl)-3-methyl-phenyl]-4-[4-fluoranyl-3-(trifluoromethyl)phenyl]-4-oxidanylidene-butanamide(Non-covalent)

G7T.1: 25 residues within 4Å: Chain A: L.21, G.22, F.26, V.29, A.42, K.44, L.46, L.51, V.56, Q.59, L.60, E.63, L.76, L.90, C.92, E.93, Y.94, A.95, T.99, E.142, N.143, L.145, A.155, D.156, F.157 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.21, A:V.29, A:L.51, A:T.99, A:L.145, A:F.157 Hydrogen bonds: A:E.93, A:A.95, A:F.157 pi-Cation interactions: A:K.44

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.225, E.227 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.225 Ligands: CL.4 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Ligands: CL.3 Ligand excluded by PLIP

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 3 residues within 4Å: Chain A: S.243, R.244, K.247 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.244 Salt bridges: A:K.247 ACT.6: 1 residues within 4Å: Chain A: N.214 No protein-ligand interaction detected (PLIP) ACT.7: 2 residues within 4Å: Chain A: R.102, K.106 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.102, A:K.106

1 x PGF: 2,5,8,11-TETRAOXATRIDECANE(Non-covalent)

PGF.8: 6 residues within 4Å: Chain A: L.107, S.108, K.109, F.110, D.111, F.233 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.109 Hydrogen bonds: A:K.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ocasio, C.A. et al., Type II Kinase Inhibitors Targeting Cys-Gatekeeper Kinases Display Orthogonality with Wild Type and Ala/Gly-Gatekeeper Kinases. ACS Chem. Biol. (2018)

Release Date

2018-10-03

Peptides

Aurora kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aurora kinase A

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