SMTL ID : 6hk6.3 (4 other biounits)

Human RIOK2 bound to inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x G8H: 2-naphthalen-2-yl-~{N}-pyridin-2-yl-ethanamide(Non-covalent)

G8H.1: 11 residues within 4Å: Chain A: M.102, I.110, I.112, A.122, M.189, E.190, L.191, I.192, G.194, I.236, I.246 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:M.102, A:I.110, A:I.112, A:A.122, A:L.191, A:I.236, A:I.246, A:I.246 Hydrogen bonds: A:I.192, A:I.192 G8H.3: 12 residues within 4Å: Chain B: V.5, M.102, I.110, I.112, A.122, M.189, E.190, L.191, I.192, G.194, I.236, I.246 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:V.5, B:M.102, B:I.110, B:I.112, B:A.122, B:L.191, B:I.236, B:I.246, B:I.246 Hydrogen bonds: B:I.192, B:I.192

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 5 residues within 4Å: Chain A: R.172, H.223, E.294, D.295, T.296 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.295 Salt bridges: A:D.295, A:D.295 EPE.4: 5 residues within 4Å: Chain B: R.172, H.223, E.294, D.295, T.296 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.295 Salt bridges: B:E.294, B:D.295, B:D.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., Crystal structure of human RIOK2 bound to a specific inhibitor. Open Biology (2019)

Release Date

2018-10-24

Peptides

Serine/threonine-protein kinase RIO2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Serine/threonine-protein kinase RIO2

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