SMTL ID : 6hlf.1

X-ray structure of Lactobacillus brevis alcohol dehydrogenase mutant - K32A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: Q.262 Chain D: Q.262 Ligands: MN.2, MG.10, MN.11 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: D:Q.262, A:Q.262, H2O.7, H2O.8, H2O.42, H2O.42 MG.3: 2 residues within 4Å: Chain A: T.63, D.65 No protein-ligand interaction detected (PLIP) MG.4: 5 residues within 4Å: Chain B: Q.262 Chain C: Q.262 Ligands: MN.5, MG.7, MN.8 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: C:Q.262, B:Q.262, H2O.19, H2O.19, H2O.30, H2O.31 MG.6: 2 residues within 4Å: Chain B: T.63, D.65 No protein-ligand interaction detected (PLIP) MG.7: 5 residues within 4Å: Chain B: Q.262 Chain C: Q.262 Ligands: MG.4, MN.5, MN.8 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: C:Q.262, B:Q.262, H2O.19, H2O.19, H2O.30, H2O.31 MG.9: 2 residues within 4Å: Chain C: T.63, D.65 No protein-ligand interaction detected (PLIP) MG.10: 5 residues within 4Å: Chain A: Q.262 Chain D: Q.262 Ligands: MG.1, MN.2, MN.11 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: D:Q.262, A:Q.262, H2O.7, H2O.8, H2O.42, H2O.42 MG.12: 2 residues within 4Å: Chain D: T.63, D.65 No protein-ligand interaction detected (PLIP)

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 5 residues within 4Å: Chain A: Q.262 Chain D: Q.262 Ligands: MG.1, MG.10, MN.11 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: D:Q.262, A:Q.262, H2O.7, H2O.8, H2O.42, H2O.42 MN.5: 5 residues within 4Å: Chain B: Q.262 Chain C: Q.262 Ligands: MG.4, MG.7, MN.8 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: C:Q.262, B:Q.262, H2O.19, H2O.19, H2O.30, H2O.31 MN.8: 5 residues within 4Å: Chain B: Q.262 Chain C: Q.262 Ligands: MG.4, MN.5, MG.7 6 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: C:Q.262, B:Q.262, H2O.19, H2O.19, H2O.30, H2O.31 MN.11: 5 residues within 4Å: Chain A: Q.262 Chain D: Q.262 Ligands: MG.1, MN.2, MG.10 6 PLIP interactions: 1 interactions with chain D, 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: D:Q.262, A:Q.262, H2O.7, H2O.8, H2O.42, H2O.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nowotny, P. et al., Rational Crystal Contact Engineering of Lactobacillus brevis Alcohol Dehydrogenase To Promote Technical Protein Crystallization. Cryst.Growth Des. (2019)

Release Date

2018-12-12

Peptides

R-specific alcohol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

R-specific alcohol dehydrogenase