SMTL ID : 6hm7.1

CRYSTAL STRUCTURE OF SPLEEN TYROSINE KINASE (SYK) IN COMPLEX WITH A 2-(PHENOXYMETHYL)PYRIDINE INHIBITOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x GDH: 7-[2-methoxy-6-[(4-methylpyridin-2-yl)methoxy]phenyl]-2,3,4,5-tetrahydro-1~{H}-3-benzazepine(Non-covalent)

GDH.1: 16 residues within 4Å: Chain A: L.18, G.19, V.26, A.41, M.89, E.90, M.91, A.92, E.93, G.95, P.96, K.99, R.139, N.140, L.142, D.153 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.26, A:A.41, A:L.142, A:L.142 Hydrogen bonds: A:A.92, A:N.140 Water bridges: A:N.140

3 x BR: BROMIDE ION(Non-covalent)

BR.2: 3 residues within 4Å: Chain A: R.8, T.12, L.13 Ligand excluded by PLIP BR.3: 4 residues within 4Å: Chain A: P.176, V.177, K.178, W.179 Ligand excluded by PLIP BR.4: 2 residues within 4Å: Chain A: R.139, W.179 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: K.110, N.111, E.114, H.147, Y.271 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.271 Water bridges: A:Q.146

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 1 residues within 4Å: Chain A: Y.72 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.118 pi-Cation interactions: A:Y.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barker, M.D. et al., Discovery of potent and selective Spleen Tyrosine Kinase inhibitors for the topical treatment of inflammatory skin disease. Bioorg. Med. Chem. Lett. (2018)

Release Date

2018-10-10

Peptides

Tyrosine-protein kinase SYK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase SYK

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