SMTL ID : 6hmc.1

STRUCTURE OF PROTEIN KINASE CK2 CATALYTIC SUBUNIT (ISOFORM CK2ALPHA'; CSNK2A2 gene product) IN COMPLEX WITH THE INDENOINDOLE-TYPE INHIBITOR THN27

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.03 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: W.39, H.198, Q.201 Ligands: EDO.8 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain A: D.145, R.149, R.305, H.306, V.308, S.309 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.149, A:R.305 Water bridges: A:D.145 EDO.3: 5 residues within 4Å: Chain A: P.310, E.311, D.314, H.336, P.337 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.314, A:D.314 Water bridges: A:D.314 EDO.4: 4 residues within 4Å: Chain A: E.202, Y.203, N.204, Q.222 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.204, A:Q.222 Water bridges: A:E.202 EDO.5: 7 residues within 4Å: Chain A: K.318, L.328, E.332, A.333, E.335, H.336, P.337 No protein-ligand interaction detected (PLIP) EDO.6: 2 residues within 4Å: Chain A: D.220, D.279 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.279 Water bridges: A:D.279, A:D.279 EDO.7: 5 residues within 4Å: Chain A: V.26, Y.27, A.28, E.29, V.30 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.27 Water bridges: A:A.28, A:A.28 EDO.8: 5 residues within 4Å: Chain A: R.36, W.39, D.40, E.42 Ligands: EDO.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.42 Water bridges: A:E.42

1 x FXB: 5-propan-2-yl-4-prop-2-enoxy-7,8-dihydro-6~{H}-indeno[1,2-b]indole-9,10-dione(Non-covalent)

FXB.9: 18 residues within 4Å: Chain A: L.60, G.61, G.63, S.66, V.68, V.81, K.83, I.110, F.128, E.129, Y.130, I.131, N.133, H.175, N.176, M.178, I.189, D.190 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.60, A:L.60, A:V.81, A:V.81, A:I.110, A:N.133, A:I.189, A:I.189, A:D.190 Hydrogen bonds: A:K.83, A:D.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lindenblatt, D. et al., Diacritic Binding of an Indenoindole Inhibitor by CK2 alpha Paralogs Explored by a Reliable Path to Atomic Resolution CK2 alpha ' Structures. Acs Omega (2019)

Release Date

2019-03-27

Peptides

Casein kinase II subunit alpha': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Casein kinase II subunit alpha'

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