SMTL ID : 6hms.1

Cryo-EM map of DNA polymerase D from Pyrococcus abyssi in complex with DNA

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 7.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FE: FE (III) ION

FE.1: 1 residues within 4Å: Ligands: ZN.2 Protein-ligand interaction information (PLIP) not available

4 x ZN: ZINC ION

ZN.2: 2 residues within 4Å: Chain A: H.341 Ligands: FE.1 Protein-ligand interaction information (PLIP) not available ZN.3: 2 residues within 4Å: Chain B: C.709, H.711 Protein-ligand interaction information (PLIP) not available ZN.4: 1 residues within 4Å: Chain B: C.753 Protein-ligand interaction information (PLIP) not available ZN.5: 0 residues within 4Å: (No contacts) Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Raia, P. et al., Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases. PLoS Biol. (2019)

Release Date

2019-01-30

Peptides

DNA polymerase II small subunit: A
DNA polymerase II large subunit,DNA polymerase II large subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA polymerase II small subunit

DNA polymerase II large subunit,DNA polymerase II large subunit

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