SMTL ID : 6hn6.1

A revisited version of the apo structure of the ligand-binding domain of the human nuclear receptor RXR-ALPHA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-dimer

Ligands

8 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.1: 14 residues within 4Å: Chain A: A.72, G.75, P.78, S.80, P.81, N.82, N.87, T.148, L.150, P.266, T.269, E.273 Ligands: CPS.2, CPS.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:N.82, A:L.150, A:P.266 Hydrogen bonds: A:A.72, A:S.80 CPS.2: 4 residues within 4Å: Chain A: E.273, E.276 Ligands: CPS.1, CPS.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.273 Hydrogen bonds: A:E.273, A:E.273, A:E.276 CPS.3: 8 residues within 4Å: Chain A: A.72, N.73, G.75, L.150, T.265, M.272 Ligands: CPS.1, CPS.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.73 CPS.4: 4 residues within 4Å: Chain A: T.66, E.67, V.70, L.76 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.66, A:V.70, A:L.76 Hydrogen bonds: A:N.77 Salt bridges: A:E.67 CPS.5: 14 residues within 4Å: Chain B: A.72, G.75, P.78, S.80, P.81, N.82, N.87, T.148, L.150, P.266, T.269, E.273 Ligands: CPS.6, CPS.7 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:N.82, B:L.150, B:P.266 Hydrogen bonds: B:A.72, B:S.80 CPS.6: 4 residues within 4Å: Chain B: E.273, E.276 Ligands: CPS.5, CPS.7 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:E.273 Hydrogen bonds: B:E.273, B:E.276, B:E.276 CPS.7: 8 residues within 4Å: Chain B: A.72, N.73, G.75, L.150, T.265, M.272 Ligands: CPS.5, CPS.6 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.73 CPS.8: 4 residues within 4Å: Chain B: T.66, E.67, V.70, L.76 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:T.66, B:V.70, B:L.76 Hydrogen bonds: B:N.77 Salt bridges: B:E.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eberhardt, J. et al., A revisited version of the apo structure of the ligand-binding domain of the human nuclear receptor retinoic X receptor alpha. Acta Crystallogr F Struct Biol Commun (2019)

Release Date

2019-02-20

Peptides

Retinoic acid receptor RXR-alpha: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Retinoic acid receptor RXR-alpha