SMTL ID : 6hn6.1

A revisited version of the apo structure of the ligand-binding domain of the human nuclear receptor RXR-ALPHA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-tetramer

Ligands

16 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)

CPS.1: 15 residues within 4Å: Chain A: A.72, G.75, P.78, S.80, P.81, N.82, N.87, T.148, L.150, P.266, T.269, E.273 Ligands: CPS.2, CPS.3, CPS.11 Ligand excluded by PLIP CPS.2: 6 residues within 4Å: Chain A: E.273, E.276 Ligands: CPS.1, CPS.3, CPS.10, CPS.11 Ligand excluded by PLIP CPS.3: 14 residues within 4Å: Chain A: A.72, N.73, G.75, L.150, T.265, M.272 Chain C: M.74, G.75, P.78 Ligands: CPS.1, CPS.2, CPS.9, CPS.10, CPS.11 Ligand excluded by PLIP CPS.4: 10 residues within 4Å: Chain A: T.66, E.67, V.70, L.76 Chain C: Y.69, N.73, A.139, V.140, L.145, H.151 Ligand excluded by PLIP CPS.5: 14 residues within 4Å: Chain B: A.72, G.75, P.78, S.80, P.81, N.82, N.87, T.148, L.150, P.266, T.269, E.273 Ligands: CPS.6, CPS.7 Ligand excluded by PLIP CPS.6: 4 residues within 4Å: Chain B: E.273, E.276 Ligands: CPS.5, CPS.7 Ligand excluded by PLIP CPS.7: 8 residues within 4Å: Chain B: A.72, N.73, G.75, L.150, T.265, M.272 Ligands: CPS.5, CPS.6 Ligand excluded by PLIP CPS.8: 4 residues within 4Å: Chain B: T.66, E.67, V.70, L.76 Ligand excluded by PLIP CPS.9: 15 residues within 4Å: Chain C: A.72, G.75, P.78, S.80, P.81, N.82, N.87, T.148, L.150, P.266, T.269, E.273 Ligands: CPS.3, CPS.10, CPS.11 Ligand excluded by PLIP CPS.10: 6 residues within 4Å: Chain C: E.273, E.276 Ligands: CPS.2, CPS.3, CPS.9, CPS.11 Ligand excluded by PLIP CPS.11: 14 residues within 4Å: Chain A: M.74, G.75, P.78 Chain C: A.72, N.73, G.75, L.150, T.265, M.272 Ligands: CPS.1, CPS.2, CPS.3, CPS.9, CPS.10 Ligand excluded by PLIP CPS.12: 10 residues within 4Å: Chain A: Y.69, N.73, A.139, V.140, L.145, H.151 Chain C: T.66, E.67, V.70, L.76 Ligand excluded by PLIP CPS.13: 14 residues within 4Å: Chain D: A.72, G.75, P.78, S.80, P.81, N.82, N.87, T.148, L.150, P.266, T.269, E.273 Ligands: CPS.14, CPS.15 Ligand excluded by PLIP CPS.14: 4 residues within 4Å: Chain D: E.273, E.276 Ligands: CPS.13, CPS.15 Ligand excluded by PLIP CPS.15: 8 residues within 4Å: Chain D: A.72, N.73, G.75, L.150, T.265, M.272 Ligands: CPS.13, CPS.14 Ligand excluded by PLIP CPS.16: 4 residues within 4Å: Chain D: T.66, E.67, V.70, L.76 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eberhardt, J. et al., A revisited version of the apo structure of the ligand-binding domain of the human nuclear receptor retinoic X receptor alpha. Acta Crystallogr F Struct Biol Commun (2019)

Release Date

2019-02-20

Peptides

Retinoic acid receptor RXR-alpha: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Retinoic acid receptor RXR-alpha