SMTL ID : 6ho5.1

TRANSCRIPTIONAL REPRESSOR ETHR FROM MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH BDM44719

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GH8: 4-(4-oxidanylidene-1'-propan-2-yl-spiro[3~{H}-chromene-2,4'-piperidine]-6-yl)-~{N}-(phenylmethyl)benzamide(Non-covalent)

GH8.1: 22 residues within 4Å: Chain A: L.99, L.102, M.114, W.115, G.118, I.119, F.122, F.126, W.150, M.154, W.157, Y.160, T.161, V.164, E.168, N.188, N.191, E.192, L.195, F.196, W.219, Y.224 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.99, A:M.114, A:W.115, A:F.122, A:F.122, A:F.122, A:F.126, A:W.150, A:W.150, A:W.157, A:W.157, A:V.164, A:V.164, A:E.168, A:N.191, A:L.195, A:F.196, A:F.196, A:W.219 Hydrogen bonds: A:Y.160, A:N.191 pi-Cation interactions: A:W.115, A:W.115 GH8.2: 22 residues within 4Å: Chain B: L.99, L.102, M.114, W.115, G.118, I.119, F.122, F.126, W.150, M.154, W.157, Y.160, T.161, V.164, E.168, N.188, N.191, E.192, L.195, F.196, W.219, Y.224 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:L.99, B:M.114, B:W.115, B:F.122, B:F.122, B:F.122, B:F.126, B:W.150, B:W.150, B:W.157, B:W.157, B:V.164, B:V.164, B:E.168, B:N.191, B:L.195, B:F.196, B:F.196, B:W.219 Hydrogen bonds: B:N.191 pi-Cation interactions: B:W.115, B:W.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanina, A. et al., A comprehensive analysis of the protein-ligand interactions in crystal structures of Mycobacterium tuberculosis EthR. Biochim Biophys Acta Proteins Proteom (2018)

Release Date

2018-12-26

Peptides

HTH-type transcriptional regulator EthR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HTH-type transcriptional regulator EthR

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