- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.26 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 5 residues within 4Å:- Chain A: R.39, Y.112, H.116, F.120
- Ligands: GOL.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.39, A:H.116
EDO.4: 2 residues within 4Å:- Chain A: K.19, K.23
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.19, A:K.23, A:K.23
- Water bridges: A:R.31
EDO.9: 5 residues within 4Å:- Chain B: R.39, Y.112, H.116, F.120
- Ligands: GOL.11
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.39, B:H.116
EDO.10: 2 residues within 4Å:- Chain B: K.19, K.23
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.19, B:K.23, B:K.23
- Water bridges: B:R.31
EDO.15: 5 residues within 4Å:- Chain C: R.39, Y.112, H.116, F.120
- Ligands: GOL.17
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.39, C:H.116
EDO.16: 2 residues within 4Å:- Chain C: K.19, K.23
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:K.19, C:K.23, C:K.23
- Water bridges: C:R.31
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 8 residues within 4Å:- Chain A: R.39, P.43, V.46, S.70, G.109, Y.112, Q.113
- Ligands: EDO.3
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.39, A:R.39, A:P.43, A:S.70, A:Q.113
GOL.6: 3 residues within 4Å:- Chain A: N.98, E.114, H.115
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.98, A:H.115
- Water bridges: A:H.115, A:H.116
GOL.11: 8 residues within 4Å:- Chain B: R.39, P.43, V.46, S.70, G.109, Y.112, Q.113
- Ligands: EDO.9
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.39, B:R.39, B:P.43, B:S.70, B:Q.113
GOL.12: 3 residues within 4Å:- Chain B: N.98, E.114, H.115
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.98, B:H.115
- Water bridges: B:H.115, B:H.116
GOL.17: 8 residues within 4Å:- Chain C: R.39, P.43, V.46, S.70, G.109, Y.112, Q.113
- Ligands: EDO.15
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.39, C:R.39, C:P.43, C:S.70, C:Q.113
GOL.18: 3 residues within 4Å:- Chain C: N.98, E.114, H.115
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:N.98, C:H.115
- Water bridges: C:H.115, C:H.116
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Birgisdottir, A.B. et al., Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy (2019)
- Release Date
- 2019-02-27
- Peptides
- Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.26 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Birgisdottir, A.B. et al., Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy (2019)
- Release Date
- 2019-02-27
- Peptides
- Phosphatidylinositol 3-kinase catalytic subunit type 3,Gamma-aminobutyric acid receptor-associated protein: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A