SMTL ID : 6hok.1

Structure of Beclin1 LIR (S96E) motif bound to GABARAP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

homo-trimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: P.101, T.102, S.103 Chain B: P.101, T.102 Ligands: EDO.3, EDO.5 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.102, A:S.103, B:T.102, B:T.102 Water bridges: A:T.102 EDO.2: 4 residues within 4Å: Chain A: V.98 Chain C: S.103, T.105, Q.108 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.103 Water bridges: C:Q.108 EDO.3: 7 residues within 4Å: Chain B: P.101, T.102, S.103 Chain C: P.101, T.102 Ligands: EDO.1, EDO.5 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:T.102, B:S.103, C:T.102, C:T.102 EDO.4: 4 residues within 4Å: Chain A: S.103, T.105, Q.108 Chain B: V.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.103 Water bridges: A:Q.108 EDO.5: 7 residues within 4Å: Chain A: P.101, T.102 Chain C: P.101, T.102, S.103 Ligands: EDO.1, EDO.3 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:T.102, A:T.102, C:T.102, C:S.103 EDO.6: 4 residues within 4Å: Chain B: S.103, T.105, Q.108 Chain C: V.98 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.103 Water bridges: B:Q.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birgisdottir, A.B. et al., Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy (2019)

Release Date

2019-02-27

Peptides

Beclin-1,Gamma-aminobutyric acid receptor-associated protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Beclin-1,Gamma-aminobutyric acid receptor-associated protein