SMTL ID : 6hp5.1

ARBITRIUM PEPTIDE RECEPTOR FROM SPBETA PHAGE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

2 x GLY- MET- PRO- ARG- GLY- ALA: GLY-MET-PRO-ARG-GLY-ALA(Non-covalent)

GLY-MET-PRO-ARG-GLY-ALA.1: 25 residues within 4Å: Chain B: Y.159, L.162, F.167, V.198, L.199, N.202, N.206, R.228, F.229, F.232, L.235, T.236, N.239, I.269, Q.272, A.273, F.276, M.296, Q.299, E.300, N.329, M.333, D.360, F.362, L.363 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.159, B:V.198, B:L.199, B:Q.272, B:A.273, B:F.276 Hydrogen bonds: B:N.202, B:N.202, B:N.206, B:N.239, B:Q.299, B:N.329 Water bridges: B:F.276, B:Q.299 Salt bridges: B:R.228, B:D.360 GLY-MET-PRO-ARG-GLY-ALA.2: 23 residues within 4Å: Chain A: Y.159, L.162, F.167, V.198, L.199, N.202, N.206, R.228, F.229, F.232, L.235, T.236, N.239, I.269, Q.272, A.273, F.276, M.296, Q.299, E.300, N.329, D.360, L.363 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.162, A:V.198, A:L.199, A:Q.272, A:A.273, A:F.276 Hydrogen bonds: A:N.202, A:N.202, A:N.239, A:Q.299, A:E.300, A:N.329, A:N.329 Water bridges: A:Y.159, A:N.206, A:N.206, A:F.276 Salt bridges: A:R.228, A:D.360

19 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: N.208, S.209, L.210, E.211 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: L.210, S.244, R.365 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: T.131, E.132, H.160 Ligand excluded by PLIP SO4.6: 3 residues within 4Å: Chain A: T.78, K.79 Ligands: SO4.9 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: N.309, E.310, N.311, S.312 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: E.211, R.214 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain A: R.82, N.109, K.111 Ligands: SO4.6 Ligand excluded by PLIP SO4.10: 7 residues within 4Å: Chain A: R.365, L.368, L.369, Q.372, Q.378, L.381, L.385 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain A: V.261, N.267, Q.271 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: R.282, E.370, K.373 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: N.208, S.209, L.210, E.211 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain B: L.210, S.244, R.365 Ligand excluded by PLIP SO4.15: 2 residues within 4Å: Chain B: N.311, S.312 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain B: R.365, L.368, Q.378, L.381, E.382, L.385 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain B: K.77, C.107, S.108 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain B: T.131, E.132, H.160 Ligand excluded by PLIP SO4.19: 2 residues within 4Å: Chain B: K.283, E.284 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain B: Y.64, F.93, N.263 Ligand excluded by PLIP SO4.21: 1 residues within 4Å: Chain B: R.189 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gallego Del Sol, F. et al., Deciphering the Molecular Mechanism Underpinning Phage Arbitrium Communication Systems. Mol.Cell (2019)

Release Date

2019-02-20

Peptides

SPBc2 prophage-derived uncharacterized protein YopK: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SPBc2 prophage-derived uncharacterized protein YopK

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