SMTL ID : 6hpw.1

Crystal structure of ENL (MLLT1) in complex with compound 20

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: V.10, R.11, C.43, I.45, F.48, A.139, G.140, G.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.11, A:G.140 EDO.2: 7 residues within 4Å: Chain A: R.21, D.32, E.75, E.76, S.77 Ligands: EDO.3, GKT.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.21, A:D.32, A:D.32, A:E.76 EDO.3: 4 residues within 4Å: Chain A: Q.19, D.32 Ligands: EDO.2, EDO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.19 EDO.4: 5 residues within 4Å: Chain A: R.17, Q.19, D.32, M.34 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.19 EDO.5: 3 residues within 4Å: Chain A: K.51, R.64, V.66 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.51, A:R.64, A:R.64 EDO.6: 5 residues within 4Å: Chain A: G.81, F.82, D.104, L.105, F.106 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.104 Water bridges: A:G.81, A:G.81 EDO.7: 3 residues within 4Å: Chain A: F.101, T.102, R.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.102, A:R.119, A:R.119 EDO.8: 3 residues within 4Å: Chain A: P.96, T.124, F.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.124

1 x GKT: 3-iodanyl-4-methyl-~{N}-[2-(piperidin-1-ylmethyl)-3~{H}-benzimidazol-5-yl]benzamide(Non-covalent)

GKT.9: 13 residues within 4Å: Chain A: F.29, H.57, S.59, F.60, P.61, E.76, S.77, G.78, Y.79, A.80, G.81, F.82 Ligands: EDO.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.29, A:P.61, A:Y.79, A:A.80, A:F.82 Hydrogen bonds: A:S.59, A:S.77, A:Y.79 Water bridges: A:A.80 Salt bridges: A:E.76 pi-Stacking: A:F.29, A:H.57, A:F.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heidenreich, D. et al., Structure-Based Approach toward Identification of Inhibitory Fragments for Eleven-Nineteen-Leukemia Protein (ENL). J.Med.Chem. (2018)

Release Date

2018-11-28

Peptides

Protein ENL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein ENL

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