SMTL ID : 6hrc.1 (1 other biounit)

Outward-facing PglK with ATPgammaS bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 21 residues within 4Å: Chain A: T.125, Y.358, K.361, L.364, S.384, G.385, C.386, G.387, K.388, S.389, T.390, Q.430, H.541 Chain B: S.483, N.484, L.485, S.486, G.487, G.488, Q.489, A.514 20 PLIP interactions: 14 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:T.125, A:G.385, A:G.385, A:C.386, A:G.387, A:K.388, A:K.388, A:S.389, A:T.390, A:T.390, A:H.541, B:S.486, B:G.487, B:G.488, B:Q.489, B:Q.489, B:A.514 Salt bridges: A:K.388 pi-Stacking: A:Y.358, A:Y.358 AGS.2: 23 residues within 4Å: Chain A: S.483, N.484, L.485, S.486, G.487, G.488, Q.489, A.514 Chain B: T.125, Y.358, K.361, L.364, S.384, G.385, C.386, G.387, K.388, S.389, T.390, Q.430, Q.510, H.541 Ligands: MG.3 18 PLIP interactions: 12 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:S.384, B:G.385, B:G.385, B:G.387, B:K.388, B:K.388, B:S.389, B:T.390, B:T.390, B:H.541, A:N.484, A:S.486, A:G.487, A:G.488, A:Q.489 Salt bridges: B:K.388 pi-Stacking: B:Y.358 Water bridges: A:S.486

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain B: S.389, Q.430, D.509 Ligands: AGS.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perez, C. et al., Structure of Outward-Facing PglK and Molecular Dynamics of Lipid-Linked Oligosaccharide Recognition and Translocation. Structure (2019)

Release Date

2019-03-06

Peptides

WlaB protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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WlaB protein

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