SMTL ID : 6hsw.2 (2 other biounits)

A CE15 glucuronoyl esterase from Teredinibacter turnerae T7901

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x BR: BROMIDE ION(Non-covalent)

BR.1: 3 residues within 4Å: Chain A: R.195, Q.199, N.202 Ligand excluded by PLIP

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 12 residues within 4Å: Chain A: R.39, R.40, G.41, A.42, F.50, A.51, A.52, N.53, K.58, T.61, N.311, Q.315 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.40, A:Q.315 Water bridges: A:R.40, A:A.59

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: P.68, L.69, L.70, T.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.69, A:L.70 EDO.4: 2 residues within 4Å: Chain A: W.439, A.440 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.440, A:A.440 EDO.5: 3 residues within 4Å: Chain A: T.433, T.436, R.437 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.433 EDO.6: 2 residues within 4Å: Chain A: Q.28, H.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.28 EDO.7: 4 residues within 4Å: Chain A: Y.258, D.262, S.263, R.264 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.258 Water bridges: A:S.263 EDO.8: 4 residues within 4Å: Chain A: E.419, G.420, G.421, P.426 No protein-ligand interaction detected (PLIP) EDO.9: 5 residues within 4Å: Chain A: Q.260, A.267, D.268, R.291, A.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.291 Water bridges: A:A.293

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 4 residues within 4Å: Chain A: T.54, G.368, E.369, S.370 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.370, A:S.370 Water bridges: A:G.368 GOL.11: 5 residues within 4Å: Chain A: N.93, T.94, Q.97, E.98, P.345 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.93, A:T.94, A:E.98 GOL.12: 3 residues within 4Å: Chain A: Y.382, H.383, P.386 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.383 GOL.13: 8 residues within 4Å: Chain A: F.169, W.174, R.185, I.189, H.275, H.422, T.423, P.424 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.275 GOL.14: 4 residues within 4Å: Chain A: M.181, P.182, A.183, E.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.183, A:E.184 GOL.15: 6 residues within 4Å: Chain A: S.157, N.158, K.159, P.160, S.263, R.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.157, A:S.263, A:S.263 GOL.16: 8 residues within 4Å: Chain A: L.146, T.213, E.214, Q.216, A.217, G.222, Q.225, G.226 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.226 Water bridges: A:A.217, A:D.221, A:G.222, A:Q.225 GOL.17: 5 residues within 4Å: Chain A: A.79, S.80, A.389, L.390, G.392 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.390 Water bridges: A:G.392 GOL.18: 11 residues within 4Å: Chain A: E.302, K.306, W.308, R.310, N.311, F.312, E.314, Q.315, V.316, G.317, V.341 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.302, A:K.306, A:N.311, A:V.316 Water bridges: A:F.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arnling Baath, J. et al., Structure-function analyses reveal that a glucuronoyl esterase fromTeredinibacter turneraeinteracts with carbohydrates and aromatic compounds. J.Biol.Chem. (2019)

Release Date

2019-03-20

Peptides

Carbohydrate esterase family 15 domain protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Carbohydrate esterase family 15 domain protein

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