SMTL ID : 6ht1.1

Crystal structure of MLLT1 (ENL) YEATS domain in complexed with SGC-iMLLT (compound 92)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.51, R.64, V.66, K.68 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.51, A:R.64, A:K.68 SO4.2: 1 residues within 4Å: Chain A: R.17 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.17

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: V.10, R.11, C.43, I.45, F.48, A.139, G.140, G.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.11, A:G.140 EDO.4: 3 residues within 4Å: Chain A: F.101, T.102, R.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.102, A:T.102, A:R.119, A:R.119 EDO.5: 3 residues within 4Å: Chain A: F.36, R.38, P.71 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: R.17, Q.19, D.32, W.33, M.34 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.19, A:W.33 EDO.7: 4 residues within 4Å: Chain A: P.96, V.99, T.124, F.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.124 Water bridges: A:T.124 EDO.8: 4 residues within 4Å: Chain A: F.82, D.104, L.105, F.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.82 Water bridges: A:G.81 EDO.9: 3 residues within 4Å: Chain A: D.32, E.76, S.77 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.32

1 x GQ5: 1-methyl-~{N}-[2-[[(2~{S})-2-methylpyrrolidin-1-yl]methyl]-3~{H}-benzimidazol-5-yl]indazole-5-carboxamide(Non-covalent)

GQ5.10: 12 residues within 4Å: Chain A: F.29, H.57, S.59, F.60, P.61, E.76, S.77, G.78, Y.79, A.80, G.81, F.82 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.29, A:A.80, A:F.82 Hydrogen bonds: A:S.59, A:S.59, A:S.77, A:Y.79 Water bridges: A:A.80 Salt bridges: A:E.76 pi-Stacking: A:F.29, A:H.57, A:H.57, A:F.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moustakim, M. et al., Discovery of an MLLT1/3 YEATS Domain Chemical Probe. Angew. Chem. Int. Ed. Engl. (2018)

Release Date

2018-10-17

Peptides

Protein ENL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein ENL

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