SMTL ID : 6hv6.1

Crystal structure of PatoxP, a cysteine protease-like domain of Photorhabdus asymbiotica toxin PaTox

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: T.166, D.169, N.189, N.311, Y.312 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.169, A:N.189 EDO.2: 4 residues within 4Å: Chain A: I.76, L.130, S.157, D.160 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.160, A:D.160 EDO.3: 4 residues within 4Å: Chain A: D.92, Y.93, I.103, A.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.92 EDO.4: 1 residues within 4Å: Chain A: D.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.339 EDO.5: 5 residues within 4Å: Chain A: S.213, Q.214, D.215, A.216, K.217 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.215, A:A.216, A:K.217 EDO.6: 4 residues within 4Å: Chain A: K.288, H.289, N.311, Y.334 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.311 Water bridges: A:Q.188, A:Q.188, A:K.288, A:N.311

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.7: 9 residues within 4Å: Chain A: P.196, S.197, E.198, A.199, L.200, H.244, K.288, H.289, T.290 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.197, A:A.199, A:L.200 Salt bridges: A:H.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bogdanovic, X. et al., A cysteine protease-like domain enhances the cytotoxic effects of thePhotorhabdus asymbioticatoxin PaTox. J. Biol. Chem. (2019)

Release Date

2018-12-05

Peptides

Toxin PAU_02230: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Toxin PAU_02230