SMTL ID : 6hvn.1

CdaA-APO Y187A Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 10 residues within 4Å: Chain A: Q.14, L.17, A.40, R.41, D.42, G.83, E.157, L.158, V.159, T.160 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.14, A:A.40, A:G.83, A:L.158, A:Q.14, A:D.42, A:D.42, A:V.159 Water bridges: A:T.160

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.108, S.127, E.128 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: S.146, E.147 Ligands: CL.5 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: Y.27, K.30, R.31 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: S.146, E.147, E.148 Ligands: CL.3 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: G.1, P.2, L.3, R.12 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain B: R.108, H.109, S.127, E.128 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain B: R.12 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: T.130, R.143, D.144 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heidemann, J.L. et al., Crystal structures of the c-di-AMP-synthesizing enzyme CdaA. J.Biol.Chem. (2019)

Release Date

2019-06-05

Peptides

Diadenylate cyclase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Diadenylate cyclase