SMTL ID : 6hwu.1

Crystal structure of p38alpha in complex with a photoswitchable 2-Azothiazol-based Inhibitor (compound 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 13 residues within 4Å: Chain A: E.194, L.197, W.199, H.201, Y.202, N.203, L.238, L.248, K.251, L.293, D.294, S.295, D.296 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.199, A:L.238, A:L.248, A:L.293 Hydrogen bonds: A:H.201, A:N.203, A:K.251, A:D.294, A:S.295, A:S.295 BOG.2: 14 residues within 4Å: Chain A: R.72, L.76, M.80, V.85, I.86, I.148, I.149, H.150, R.151, I.168, L.169, D.170, Q.327, E.330 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.85, A:I.86, A:I.148 Hydrogen bonds: A:R.72, A:R.151 Water bridges: A:R.151 BOG.3: 4 residues within 4Å: Chain A: E.24, R.25, Q.27, T.46 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.27

1 x GE5: 3-(2,5-dimethoxyphenyl)-~{N}-[4-[4-(4-fluorophenyl)-2-[(~{E})-phenyldiazenyl]-1,3-thiazol-5-yl]pyridin-2-yl]propanamide(Non-covalent)

GE5.4: 15 residues within 4Å: Chain A: V.32, G.35, A.36, V.40, A.53, K.55, L.106, V.107, T.108, H.109, L.110, M.111, F.171, G.172, L.173 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.32, A:A.36, A:A.53, A:K.55, A:F.171, A:F.171, A:F.171, A:L.173 Hydrogen bonds: A:A.36, A:K.55, A:M.111, A:M.111 pi-Stacking: A:F.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schehr, M. et al., 2-Azo-, 2-diazocine-thiazols and 2-azo-imidazoles as photoswitchable kinase inhibitors: limitations and pitfalls of the photoswitchable inhibitor approach. Photochem. Photobiol. Sci. (2019)

Release Date

2019-04-17

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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