SMTL ID : 6hxo.1 (1 other biounit)

Structure of the citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase (space group P21)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

3 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 10 residues within 4Å: Chain A: H.86, V.90, F.121, G.122, H.162, R.173, V.213, D.214, R.239 Chain C: R.259 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:H.86, A:G.122, A:H.162, A:H.162, A:R.173, A:R.173 Water bridges: A:H.162 Salt bridges: A:H.86, A:H.86, A:H.162, A:R.173, A:R.239, C:R.259 FLC.4: 7 residues within 4Å: Chain A: R.259 Chain C: H.86, V.90, F.121, G.122, D.214, R.239 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:H.86, C:G.122 Salt bridges: C:H.86, C:H.86, C:R.239, A:R.259 FLC.6: 10 residues within 4Å: Chain B: R.259 Chain D: H.86, V.90, F.121, G.122, H.162, R.173, V.213, D.214, R.239 13 PLIP interactions: 1 interactions with chain B, 12 interactions with chain D Salt bridges: B:R.259, D:H.86, D:H.86, D:H.162, D:R.173, D:R.239 Hydrogen bonds: D:H.86, D:G.122, D:H.162, D:R.173, D:R.173 Water bridges: D:H.162, D:H.162

3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 3 residues within 4Å: Chain B: T.69, R.70, E.71 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:T.69, B:R.70, B:E.71 Water bridges: B:E.71, B:E.71 Salt bridges: B:R.70, B:E.71 MES.3: 5 residues within 4Å: Chain B: D.138, Y.139, P.140, N.141, D.142 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.141, B:N.141 MES.5: 4 residues within 4Å: Chain C: R.27 Chain D: N.266, Y.267, A.268 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Salt bridges: C:R.27 Hydrogen bonds: D:N.266

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Verschueren, K.H.G. et al., Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle. Nature (2019)

Release Date

2019-04-10

Peptides

ATP-citrate lyase alpha-subunit: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

ATP-citrate lyase alpha-subunit

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