SMTL ID : 6hye.1

PDX1.2/PDX1.3 complex (PDX1.3:K97A)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

hetero-12-12-mer

Ligands

24 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: F.135, E.154, R.157, R.158 Chain C: H.131, R.153, R.154 Chain U: K.208 Chain W: K.203 Ligand excluded by PLIP SO4.2: 11 residues within 4Å: Chain A: G.234, G.235, G.256 Chain C: P.65, E.167, A.168, G.169, G.229, G.230, V.250, G.251 Ligand excluded by PLIP SO4.3: 8 residues within 4Å: Chain B: F.135, R.157, R.158 Chain D: E.150, R.153, R.154 Chain R: K.208 Chain T: K.203 Ligand excluded by PLIP SO4.4: 12 residues within 4Å: Chain B: T.173, G.234, G.235, V.255, G.256 Chain D: E.167, A.168, G.169, G.229, G.230, V.250, G.251 Ligand excluded by PLIP SO4.5: 9 residues within 4Å: Chain E: F.135, E.154, R.157, R.158 Chain G: H.131, R.153, R.154 Chain M: K.208 Chain O: K.203 Ligand excluded by PLIP SO4.6: 11 residues within 4Å: Chain E: G.234, G.235, G.256 Chain G: P.65, E.167, A.168, G.169, G.229, G.230, V.250, G.251 Ligand excluded by PLIP SO4.7: 8 residues within 4Å: Chain F: F.135, R.157, R.158 Chain H: E.150, R.153, R.154 Chain V: K.208 Chain X: K.203 Ligand excluded by PLIP SO4.8: 12 residues within 4Å: Chain F: T.173, G.234, G.235, V.255, G.256 Chain H: E.167, A.168, G.169, G.229, G.230, V.250, G.251 Ligand excluded by PLIP SO4.9: 9 residues within 4Å: Chain I: F.135, E.154, R.157, R.158 Chain K: H.131, R.153, R.154 Chain Q: K.208 Chain S: K.203 Ligand excluded by PLIP SO4.10: 11 residues within 4Å: Chain I: G.234, G.235, G.256 Chain K: P.65, E.167, A.168, G.169, G.229, G.230, V.250, G.251 Ligand excluded by PLIP SO4.11: 8 residues within 4Å: Chain J: F.135, R.157, R.158 Chain L: E.150, R.153, R.154 Chain N: K.208 Chain P: K.203 Ligand excluded by PLIP SO4.12: 12 residues within 4Å: Chain J: T.173, G.234, G.235, V.255, G.256 Chain L: E.167, A.168, G.169, G.229, G.230, V.250, G.251 Ligand excluded by PLIP SO4.13: 10 residues within 4Å: Chain E: K.208 Chain G: K.203 Chain M: F.135, E.154, R.157, R.158 Chain O: H.131, E.150, R.153, R.154 Ligand excluded by PLIP SO4.14: 11 residues within 4Å: Chain M: E.48, G.234, G.235, G.256 Chain O: K.165, E.167, A.168, G.169, G.229, G.230, G.251 Ligand excluded by PLIP SO4.15: 9 residues within 4Å: Chain J: K.208 Chain L: K.203 Chain N: F.135, R.157, R.158 Chain P: H.131, E.150, R.153, R.154 Ligand excluded by PLIP SO4.16: 10 residues within 4Å: Chain N: T.173, G.235, G.256 Chain P: K.165, E.167, A.168, G.169, G.229, G.230, G.251 Ligand excluded by PLIP SO4.17: 10 residues within 4Å: Chain I: K.208 Chain K: K.203 Chain Q: F.135, E.154, R.157, R.158 Chain S: H.131, E.150, R.153, R.154 Ligand excluded by PLIP SO4.18: 11 residues within 4Å: Chain Q: E.48, G.234, G.235, G.256 Chain S: K.165, E.167, A.168, G.169, G.229, G.230, G.251 Ligand excluded by PLIP SO4.19: 9 residues within 4Å: Chain B: K.208 Chain D: K.203 Chain R: F.135, R.157, R.158 Chain T: H.131, E.150, R.153, R.154 Ligand excluded by PLIP SO4.20: 10 residues within 4Å: Chain R: T.173, G.235, G.256 Chain T: K.165, E.167, A.168, G.169, G.229, G.230, G.251 Ligand excluded by PLIP SO4.21: 10 residues within 4Å: Chain A: K.208 Chain C: K.203 Chain U: F.135, E.154, R.157, R.158 Chain W: H.131, E.150, R.153, R.154 Ligand excluded by PLIP SO4.22: 11 residues within 4Å: Chain U: E.48, G.234, G.235, G.256 Chain W: K.165, E.167, A.168, G.169, G.229, G.230, G.251 Ligand excluded by PLIP SO4.23: 9 residues within 4Å: Chain F: K.208 Chain H: K.203 Chain V: F.135, R.157, R.158 Chain X: H.131, E.150, R.153, R.154 Ligand excluded by PLIP SO4.24: 10 residues within 4Å: Chain V: T.173, G.235, G.256 Chain X: K.165, E.167, A.168, G.169, G.229, G.230, G.251 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robinson, G.C. et al., Crystal structure of the pseudoenzyme PDX1.2 in complex with its cognate enzyme PDX1.3: a total eclipse. Acta Crystallogr D Struct Biol (2019)

Release Date

2019-04-24

Peptides

Pyridoxal 5'-phosphate synthase-like subunit PDX1.2: ABEFIJMNQRUV
Pyridoxal 5'-phosphate synthase subunit PDX1.3: CDGHKLOPSTWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

E
A

F
G

I
A

J
G

M
C

N
E

Q
C

R
E

U
C

V
E

C
B

D
H

G
B

H
H

K
B

L
H

O
D

P
F

S
D

T
F

W
D

X
F

Pyridoxal 5'-phosphate synthase-like subunit PDX1.2

Pyridoxal 5'-phosphate synthase subunit PDX1.3

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