SMTL ID : 6hyo.1

Structure of ULK1 LIR motif bound to GABARAP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.07 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: R.42, P.46, D.47, V.49, S.73, G.112, Y.115, Q.116 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.42, A:P.46, A:S.73, A:G.112, A:Q.116

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 1 residues within 4Å: Chain A: F.31 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.34 PEG.3: 4 residues within 4Å: Chain A: K.43, K.44, P.46, D.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.43, A:D.47 Water bridges: A:D.47, A:D.47 PEG.4: 2 residues within 4Å: Chain A: K.66, R.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.87, A:R.87 PEG.5: 4 residues within 4Å: Chain A: V.24, E.54, K.55, K.67 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.67 Water bridges: A:K.55 PEG.6: 1 residues within 4Å: Ligands: PEG.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.74 PEG.7: 1 residues within 4Å: Ligands: PEG.6 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: K.66, K.67, K.68 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.67, A:K.68, A:K.68 Water bridges: A:D.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wirth, M. et al., Molecular determinants regulating selective binding of autophagy adapters and receptors to ATG8 proteins. Nat Commun (2019)

Release Date

2019-05-08

Peptides

Serine/threonine-protein kinase ULK1,Gamma-aminobutyric acid receptor-associated protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase ULK1,Gamma-aminobutyric acid receptor-associated protein