- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.05 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 15 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
PLC.2: 8 residues within 4Å:- Chain A: R.118, F.121, Y.194, I.202, Y.254, N.307, F.315
- Ligands: PLC.4
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.121, A:I.202
- Salt bridges: A:R.118
PLC.3: 6 residues within 4Å:- Chain A: F.207, W.217, P.300
- Chain B: I.271, V.275, Y.278
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain A- Hydrophobic interactions: B:I.271, B:Y.278, A:F.207, A:W.217, A:W.217, A:W.217, A:W.217, A:P.300
PLC.4: 1 residues within 4Å:- Ligands: PLC.2
No protein-ligand interaction detected (PLIP)PLC.13: 9 residues within 4Å:- Chain B: R.118, F.121, Y.194, I.202, Y.254, I.258, N.307, F.315
- Ligands: PLC.15
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.121, B:F.121, B:I.202, B:I.258
- Salt bridges: B:R.118
PLC.14: 6 residues within 4Å:- Chain B: T.214, W.217
- Chain C: F.267, I.271, V.275, Y.278
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain C- Hydrophobic interactions: B:T.214, B:W.217, B:W.217, B:W.217, C:F.267, C:I.271, C:I.271, C:Y.278
PLC.15: 2 residues within 4Å:- Chain B: L.304
- Ligands: PLC.13
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.304
PLC.22: 9 residues within 4Å:- Chain C: R.118, F.121, Y.194, I.198, Y.254, I.258, N.307, F.315
- Ligands: PLC.24
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:F.121, C:F.121, C:I.198, C:I.258
- Hydrogen bonds: C:R.118
PLC.23: 5 residues within 4Å:- Chain C: W.217
- Chain D: F.267, I.271, V.275, Y.278
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain C- Hydrophobic interactions: D:F.267, D:I.271, D:V.275, D:Y.278, C:W.217, C:W.217, C:W.217
PLC.24: 2 residues within 4Å:- Chain C: L.304
- Ligands: PLC.22
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.304
PLC.30: 9 residues within 4Å:- Chain D: R.118, F.121, Y.194, I.202, Y.254, I.258, N.307, F.315
- Ligands: PLC.32
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:F.121, D:F.121, D:I.202, D:I.258
- Hydrogen bonds: D:R.118
PLC.31: 4 residues within 4Å:- Chain D: W.213, W.217
- Chain E: V.275, Y.278
5 PLIP interactions:1 interactions with chain E, 4 interactions with chain D- Hydrophobic interactions: E:Y.278, D:W.213, D:W.217, D:W.217, D:W.217
PLC.32: 1 residues within 4Å:- Ligands: PLC.30
No protein-ligand interaction detected (PLIP)PLC.38: 8 residues within 4Å:- Chain E: R.118, F.121, Y.194, Y.254, I.258, N.307, F.315
- Ligands: PLC.40
2 PLIP interactions:2 interactions with chain E- Hydrophobic interactions: E:I.258
- Salt bridges: E:R.118
PLC.39: 5 residues within 4Å:- Chain A: F.267, I.271, V.275, Y.278
- Chain E: W.217
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain E- Hydrophobic interactions: A:F.267, A:I.271, A:Y.278, E:W.217, E:W.217
PLC.40: 1 residues within 4Å:- Ligands: PLC.38
No protein-ligand interaction detected (PLIP)- 7 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 3 residues within 4Å:- Chain A: F.78, A.84, R.85
Ligand excluded by PLIPCL.6: 2 residues within 4Å:- Chain A: N.139, L.180
Ligand excluded by PLIPCL.7: 2 residues within 4Å:- Chain A: F.174, A.175
Ligand excluded by PLIPCL.16: 4 residues within 4Å:- Chain B: F.78, V.81, A.84, R.85
Ligand excluded by PLIPCL.25: 3 residues within 4Å:- Chain C: F.78, A.84, R.85
Ligand excluded by PLIPCL.33: 3 residues within 4Å:- Chain D: F.78, A.84, R.85
Ligand excluded by PLIPCL.41: 3 residues within 4Å:- Chain E: F.78, A.84, R.85
Ligand excluded by PLIP- 6 x NA: SODIUM ION(Non-functional Binders)
NA.8: 3 residues within 4Å:- Chain A: P.68, I.71, I.73
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.71, A:I.73
NA.17: 3 residues within 4Å:- Chain B: P.68, I.71, I.73
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.73
NA.21: 2 residues within 4Å:- Chain C: T.226
- Chain D: T.226
4 PLIP interactions:1 interactions with chain E, 1 interactions with chain D, 2 interactions with chain C- Water bridges: E:T.226
- Hydrogen bonds: D:T.226, C:T.226, C:T.226
NA.26: 3 residues within 4Å:- Chain C: P.68, I.71, I.73
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:P.68, C:I.73
NA.34: 3 residues within 4Å:- Chain D: P.68, I.71, I.73
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:P.68, D:I.73
NA.42: 3 residues within 4Å:- Chain E: P.68, E.69, I.71
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:P.68
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
LMT.10: 3 residues within 4Å:- Ligands: LMT.11, LMT.36, LMT.44
No protein-ligand interaction detected (PLIP)LMT.11: 4 residues within 4Å:- Chain A: A.237, I.240
- Chain E: A.237
- Ligands: LMT.10
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain E- Hydrophobic interactions: A:A.237, A:I.240, E:A.237
LMT.19: 4 residues within 4Å:- Chain A: A.237
- Chain B: A.237, I.240
- Chain C: T.244
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:A.237, B:A.237, B:I.240
LMT.28: 5 residues within 4Å:- Chain B: A.237
- Chain C: A.237, I.240
- Chain D: T.244
- Ligands: LMT.36
4 PLIP interactions:1 interactions with chain D, 1 interactions with chain B, 2 interactions with chain C- Hydrophobic interactions: D:T.244, B:A.237, C:I.240, C:I.240
LMT.36: 5 residues within 4Å:- Chain D: A.237, I.240
- Chain E: T.244
- Ligands: LMT.10, LMT.28
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain D- Hydrophobic interactions: E:T.244, D:A.237, D:I.240
LMT.44: 5 residues within 4Å:- Chain A: T.244
- Chain D: A.237
- Chain E: A.237, I.240
- Ligands: LMT.10
3 PLIP interactions:2 interactions with chain E, 1 interactions with chain D- Hydrophobic interactions: E:A.237, E:I.240, D:A.237
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hu, H. et al., Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-12-19
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.05 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 15 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hu, H. et al., Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-12-19
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.