- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 15 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
PLC.2: 9 residues within 4Å:- Chain A: R.118, F.121, I.198, I.202, L.206, Y.254, N.307, F.315
- Ligands: PLC.3
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.121, A:F.121, A:I.198, A:L.206, A:Y.254
- Hydrogen bonds: A:R.118
PLC.3: 1 residues within 4Å:- Ligands: PLC.2
No protein-ligand interaction detected (PLIP)PLC.12: 7 residues within 4Å:- Chain A: F.267, I.271, V.275, Y.278
- Chain E: F.210, T.214, W.217
8 PLIP interactions:4 interactions with chain A, 4 interactions with chain E- Hydrophobic interactions: A:F.267, A:I.271, A:V.275, A:Y.278, E:F.210, E:T.214, E:W.217, E:W.217
PLC.13: 8 residues within 4Å:- Chain A: F.210, T.214, W.217
- Chain B: F.267, I.271, T.274, V.275, Y.278
9 PLIP interactions:4 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:F.210, A:T.214, A:W.217, A:W.217, B:F.267, B:I.271, B:T.274, B:V.275, B:Y.278
PLC.15: 9 residues within 4Å:- Chain B: R.118, F.121, I.198, I.202, L.206, Y.254, N.307, F.315
- Ligands: PLC.16
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:F.121, B:F.121, B:I.198, B:L.206, B:Y.254
- Hydrogen bonds: B:R.118
PLC.16: 1 residues within 4Å:- Ligands: PLC.15
No protein-ligand interaction detected (PLIP)PLC.22: 7 residues within 4Å:- Chain B: F.210, T.214, W.217
- Chain C: F.267, I.271, V.275, Y.278
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:F.267, C:I.271, C:V.275, C:Y.278, B:F.210, B:T.214, B:W.217, B:W.217
PLC.23: 9 residues within 4Å:- Chain C: R.118, F.121, I.198, I.202, L.206, Y.254, N.307, F.315
- Ligands: PLC.24
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:F.121, C:F.121, C:I.198, C:L.206, C:Y.254
- Hydrogen bonds: C:R.118
PLC.24: 1 residues within 4Å:- Ligands: PLC.23
No protein-ligand interaction detected (PLIP)PLC.30: 7 residues within 4Å:- Chain C: F.210, T.214, W.217
- Chain D: F.267, I.271, V.275, Y.278
8 PLIP interactions:4 interactions with chain C, 4 interactions with chain D- Hydrophobic interactions: C:F.210, C:T.214, C:W.217, C:W.217, D:F.267, D:I.271, D:V.275, D:Y.278
PLC.31: 9 residues within 4Å:- Chain D: R.118, F.121, I.198, I.202, L.206, Y.254, N.307, F.315
- Ligands: PLC.32
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:F.121, D:F.121, D:I.198, D:L.206, D:Y.254
- Hydrogen bonds: D:R.118
PLC.32: 1 residues within 4Å:- Ligands: PLC.31
No protein-ligand interaction detected (PLIP)PLC.38: 7 residues within 4Å:- Chain D: F.210, T.214, W.217
- Chain E: F.267, I.271, V.275, Y.278
7 PLIP interactions:4 interactions with chain D, 3 interactions with chain E- Hydrophobic interactions: D:F.210, D:T.214, D:W.217, D:W.217, E:F.267, E:I.271, E:Y.278
PLC.40: 9 residues within 4Å:- Chain E: R.118, F.121, I.198, I.202, L.206, Y.254, N.307, F.315
- Ligands: PLC.41
6 PLIP interactions:6 interactions with chain E- Hydrophobic interactions: E:F.121, E:F.121, E:I.198, E:L.206, E:Y.254
- Hydrogen bonds: E:R.118
PLC.41: 1 residues within 4Å:- Ligands: PLC.40
No protein-ligand interaction detected (PLIP)- 7 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 4 residues within 4Å:- Chain A: R.77, F.78, V.81, R.85
Ligand excluded by PLIPCL.5: 3 residues within 4Å:- Chain A: N.139, R.179, L.180
Ligand excluded by PLIPCL.6: 1 residues within 4Å:- Chain A: A.175
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain B: R.77, F.78, V.81, R.85
Ligand excluded by PLIPCL.25: 4 residues within 4Å:- Chain C: R.77, F.78, V.81, R.85
Ligand excluded by PLIPCL.33: 4 residues within 4Å:- Chain D: R.77, F.78, V.81, R.85
Ligand excluded by PLIPCL.42: 4 residues within 4Å:- Chain E: R.77, F.78, V.81, R.85
Ligand excluded by PLIP- 6 x NA: SODIUM ION(Non-functional Binders)
NA.7: 4 residues within 4Å:- Chain A: P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:I.71, A:I.73
NA.8: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.226, B:T.226
NA.18: 5 residues within 4Å:- Chain B: V.5, P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:P.68, B:I.73
NA.26: 5 residues within 4Å:- Chain C: V.5, P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:P.68, C:I.73
NA.34: 5 residues within 4Å:- Chain D: V.5, P.68, I.71, W.72, I.73
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:I.73
NA.43: 5 residues within 4Å:- Chain E: V.5, P.68, I.71, W.72, I.73
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:P.68, E:I.73
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
LMT.10: 3 residues within 4Å:- Ligands: LMT.11, LMT.20, LMT.28
No protein-ligand interaction detected (PLIP)LMT.11: 8 residues within 4Å:- Chain A: I.233, I.236, A.237, I.240, T.244
- Chain B: T.244
- Chain E: A.237
- Ligands: LMT.10
5 PLIP interactions:1 interactions with chain E, 1 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: E:A.237, B:T.244, A:I.236, A:A.237, A:I.240
LMT.20: 7 residues within 4Å:- Chain A: A.237
- Chain B: I.233, A.237, I.240, L.241
- Chain C: T.244
- Ligands: LMT.10
6 PLIP interactions:1 interactions with chain C, 1 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: C:T.244, A:A.237, B:I.233, B:I.240, B:I.240, B:L.241
LMT.28: 5 residues within 4Å:- Chain B: A.237
- Chain C: I.233, I.240
- Chain D: T.244
- Ligands: LMT.10
5 PLIP interactions:3 interactions with chain C, 1 interactions with chain B, 1 interactions with chain D- Hydrophobic interactions: C:I.233, C:I.240, C:I.240, B:A.237, D:T.244
LMT.36: 8 residues within 4Å:- Chain C: A.237
- Chain D: I.233, A.237, I.240, L.241
- Chain E: I.240, T.244
- Ligands: LMT.37
8 PLIP interactions:5 interactions with chain D, 2 interactions with chain E, 1 interactions with chain C- Hydrophobic interactions: D:I.233, D:A.237, D:I.240, D:I.240, D:L.241, E:I.240, E:T.244, C:A.237
LMT.37: 6 residues within 4Å:- Chain A: T.244
- Chain D: A.237
- Chain E: A.237, I.240, T.244
- Ligands: LMT.36
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain E- Hydrophobic interactions: A:T.244, E:A.237, E:I.240, E:I.240
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hu, H. et al., Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-12-19
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-pentamer
- Ligands
- 10 x ACT: ACETATE ION(Non-functional Binders)
- 15 x PLC: DIUNDECYL PHOSPHATIDYL CHOLINE(Non-covalent)(Non-functional Binders)
- 7 x CL: CHLORIDE ION(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 6 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-functional Binders)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hu, H. et al., Electrostatics, proton sensor, and networks governing the gating transition in GLIC, a proton-gated pentameric ion channel. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-12-19
- Peptides
- Proton-gated ion channel: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.