- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-12-2-mer
- Ligands
- 6 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: T.47, D.118
- Chain B: R.188
- Ligands: GNP.1
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:T.47, A:D.118
MG.4: 5 residues within 4Å:- Chain B: T.47
- Chain C: K.140, R.187, R.188
- Ligands: GNP.3
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.47
MG.6: 3 residues within 4Å:- Chain C: T.47, D.118
- Ligands: GNP.5
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.47
MG.11: 4 residues within 4Å:- Chain H: T.47, D.118
- Chain I: R.188
- Ligands: GNP.10
2 PLIP interactions:2 interactions with chain H- Metal complexes: H:T.47, H:D.118
MG.13: 5 residues within 4Å:- Chain I: T.47
- Chain J: K.140, R.187, R.188
- Ligands: GNP.12
1 PLIP interactions:1 interactions with chain I- Metal complexes: I:T.47
MG.15: 3 residues within 4Å:- Chain J: T.47, D.118
- Ligands: GNP.14
1 PLIP interactions:1 interactions with chain J- Metal complexes: J:T.47
- 6 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.7: 16 residues within 4Å:- Chain D: D.15, L.16, F.17, P.42, G.43, V.44, G.45, K.46, T.47, F.48, H.246, S.247, C.250, C.251
- Chain E: D.139, K.140
17 PLIP interactions:1 interactions with chain E, 16 interactions with chain D- Salt bridges: E:K.140, D:D.15, D:K.46
- Hydrogen bonds: D:D.15, D:D.15, D:F.17, D:G.43, D:V.44, D:G.45, D:K.46, D:T.47, D:T.47, D:F.48, D:H.246
- pi-Stacking: D:F.17, D:F.48
- pi-Cation interactions: D:F.17
GDP.8: 19 residues within 4Å:- Chain E: D.15, L.16, F.17, P.42, G.43, V.44, G.45, K.46, T.47, F.48, F.206, H.246, S.247, C.250, C.251
- Chain F: E.137, D.139, K.140, R.187
13 PLIP interactions:10 interactions with chain E, 3 interactions with chain F- Hydrogen bonds: E:D.15, E:F.17, E:G.43, E:G.45, E:K.46, E:T.47, E:T.47, E:T.47, E:H.246, E:S.247
- Salt bridges: F:K.140, F:K.140, F:R.187
GDP.9: 17 residues within 4Å:- Chain A: D.139, K.140, R.187
- Chain F: D.15, L.16, F.17, P.42, G.43, V.44, G.45, K.46, T.47, F.48, H.246, S.247, C.250, C.251
15 PLIP interactions:3 interactions with chain A, 12 interactions with chain F- Salt bridges: A:K.140, A:K.140, A:R.187
- Hydrogen bonds: F:D.15, F:F.17, F:G.43, F:V.44, F:G.45, F:K.46, F:T.47, F:T.47, F:S.247
- pi-Stacking: F:F.48, F:F.48
- pi-Cation interactions: F:F.48
GDP.16: 16 residues within 4Å:- Chain K: D.15, L.16, F.17, P.42, G.43, V.44, G.45, K.46, T.47, F.48, H.246, S.247, C.250, C.251
- Chain L: D.139, K.140
17 PLIP interactions:16 interactions with chain K, 1 interactions with chain L- Hydrogen bonds: K:D.15, K:D.15, K:F.17, K:G.43, K:V.44, K:G.45, K:K.46, K:T.47, K:T.47, K:F.48, K:H.246
- Salt bridges: K:D.15, K:K.46, L:K.140
- pi-Stacking: K:F.17, K:F.48
- pi-Cation interactions: K:F.17
GDP.17: 19 residues within 4Å:- Chain L: D.15, L.16, F.17, P.42, G.43, V.44, G.45, K.46, T.47, F.48, F.206, H.246, S.247, C.250, C.251
- Chain M: E.137, D.139, K.140, R.187
13 PLIP interactions:10 interactions with chain L, 3 interactions with chain M- Hydrogen bonds: L:D.15, L:F.17, L:G.43, L:G.45, L:K.46, L:T.47, L:T.47, L:T.47, L:H.246, L:S.247
- Salt bridges: M:K.140, M:K.140, M:R.187
GDP.18: 17 residues within 4Å:- Chain H: D.139, K.140, R.187
- Chain M: D.15, L.16, F.17, P.42, G.43, V.44, G.45, K.46, T.47, F.48, H.246, S.247, C.250, C.251
15 PLIP interactions:12 interactions with chain M, 3 interactions with chain H- Hydrogen bonds: M:D.15, M:F.17, M:G.43, M:V.44, M:G.45, M:K.46, M:T.47, M:T.47, M:S.247
- pi-Stacking: M:F.48, M:F.48
- pi-Cation interactions: M:F.48
- Salt bridges: H:K.140, H:K.140, H:R.187
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nirwan, N. et al., Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun (2019)
- Release Date
- 2019-07-24
- Peptides
- 5-methylcytosine-specific restriction enzyme B: ABCDEFHIJKLM
Protein McrC: GN - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FH
GI
HJ
IK
JL
KM
LG
MN
N
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-12-2-mer
- Ligands
- 6 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nirwan, N. et al., Structure-based mechanism for activation of the AAA+ GTPase McrB by the endonuclease McrC. Nat Commun (2019)
- Release Date
- 2019-07-24
- Peptides
- 5-methylcytosine-specific restriction enzyme B: ABCDEFHIJKLM
Protein McrC: GN - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FH
GI
HJ
IK
JL
KM
LG
MN
N