SMTL ID : 6i03.1

D10N variant of beta-phosphoglucomutase from Lactococcus lactis complexed with tetrafluoroaluminate and beta-G6P to 1.02 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.02 Å

Oligo State

monomer

Ligands

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.1: 10 residues within 4Å: Chain A: D.9, L.10, N.11, G.47, A.114, S.115, A.116, K.146 Ligands: BG6.2, MG.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.9

1 x BG6: 6-O-phosphono-beta-D-glucopyranose(Non-covalent)

BG6.2: 18 residues within 4Å: Chain A: D.9, N.11, H.21, L.45, K.46, G.47, V.48, S.49, R.50, S.53, K.77, S.115, A.116, S.117, K.118, N.119 Ligands: ALF.1, MG.4 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:N.11, A:W.25, A:L.45, A:G.47, A:S.53, A:K.118, A:N.119, A:N.119 Water bridges: A:D.9, A:N.11, A:H.21, A:H.21, A:R.50, A:R.50, A:K.77, A:S.117, A:D.171 Salt bridges: A:H.21, A:H.21, A:R.50, A:K.77

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: E.125, N.128 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.128

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 6 residues within 4Å: Chain A: D.9, N.11, E.170, D.171 Ligands: ALF.1, BG6.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.9, A:N.11, A:D.171, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robertson, A.J. et al., Proton transfer modulates the electrostatic environment in a general acid-base catalyzed phosphoryl transfer reaction. To Be Published

Release Date

2019-11-20

Peptides

Beta-phosphoglucomutase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-phosphoglucomutase