SMTL ID : 6i0a.1

Crystal structure of RlpA SPOR domain from Pseudomonas aeruginosa in complex with nuded glycan obtained by co-crystallization

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x AMV- NAG- AMU- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside

AMV-NAG-AMU-NAG.1: 12 residues within 4Å: Chain A: Q.5, V.6, G.7, A.8, F.9, A.10, N.11, A.14, R.37, L.42, R.44, Q.70 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.8, A:A.10, A:N.11, A:Q.5, A:Q.5 Hydrophobic interactions: A:A.8, A:L.42, A:F.9 Water bridges: A:R.46 Salt bridges: A:R.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alcorlo, M. et al., Structural basis of denuded glycan recognition by SPOR domains in bacterial cell division. Nat Commun (2019)

Release Date

2019-11-13

Peptides

Endolytic peptidoglycan transglycosylase RlpA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolytic peptidoglycan transglycosylase RlpA

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