SMTL ID : 6i0n.1

Crystal structure of RlpA SPOR domain from Pseudomonas aeruginosa in complex with denuded glycan ended in anhNAM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x NAG- AMU- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-AMU-NAG.1: 12 residues within 4Å: Chain A: Q.5, V.6, G.7, A.8, F.9, A.10, N.11, A.14, L.42, Q.70, T.72 Ligands: AH0.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.42, A:F.9 Hydrogen bonds: A:A.8, A:A.10, A:N.11

1 x AH0: 2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID(Non-covalent)

AH0.2: 5 residues within 4Å: Chain A: Q.5, R.37, T.72, V.74 Ligands: NAG-AMU-NAG.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.5, A:V.74 Salt bridges: A:R.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alcorlo, M. et al., Structural basis of denuded glycan recognition by SPOR domains in bacterial cell division. Nat Commun (2019)

Release Date

2019-11-13

Peptides

Endolytic peptidoglycan transglycosylase RlpA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endolytic peptidoglycan transglycosylase RlpA

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