SMTL ID : 6i0s.1

Crystal structure of DmTailor in complex with UMPNPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 2KH: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine(Non-covalent)

2KH.1: 17 residues within 4Å: Chain A: F.89, G.90, S.91, S.101, D.104, R.151, G.174, N.177, T.178, K.199, S.212, T.213, Y.214, D.340, H.346, V.348 Ligands: MG.2 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.214 Hydrogen bonds: A:S.91, A:S.91, A:S.91, A:R.151, A:R.151, A:N.177, A:T.178, A:T.213 Water bridges: A:R.92, A:R.92, A:S.101, A:D.104, A:D.167, A:D.167, A:G.174, A:N.177, A:T.178, A:T.213, A:Y.214, A:S.215, A:H.346 Salt bridges: A:K.199

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: G.90, S.91, D.104 Ligands: 2KH.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.104, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kroupova, A. et al., Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor. Nucleic Acids Res. (2019)

Release Date

2018-12-05

Peptides

Terminal uridylyltransferase Tailor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Terminal uridylyltransferase Tailor

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