SMTL ID : 6i1n.1 (1 other biounit)

Plasmodium falciparum spermidine synthase in complex with N-(3-aminopropyl)-trans-cyclohexane-1,4-diamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x 1PG: 2-(2-{2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL(Non-covalent)

1PG.1: 8 residues within 4Å: Chain A: K.42, S.45, F.47, S.57 Chain B: W.43, S.45, S.57 Ligands: 1PG.3 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.45, A:S.57, B:S.45, B:S.57 1PG.3: 8 residues within 4Å: Chain A: W.43, S.45, S.57 Chain B: K.42, S.45, F.47, S.57 Ligands: 1PG.1 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.45, A:S.57, B:S.45, B:S.57

2 x JFQ: trans-N-(3-aminopropyl)cyclohexane-1,4-diamine(Non-covalent)

JFQ.2: 9 residues within 4Å: Chain A: Q.72, L.88, G.124, E.147, I.148, V.152, D.178, A.179, S.197 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.148, A:I.148 Hydrogen bonds: A:Q.72, A:E.147, A:D.178, A:A.179 Water bridges: A:S.180 JFQ.4: 9 residues within 4Å: Chain B: Q.72, L.88, G.124, E.147, I.148, V.152, D.178, A.179, S.197 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.148, B:I.148 Hydrogen bonds: B:Q.72, B:E.147, B:D.178, B:D.178, B:A.179 Water bridges: B:S.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sprenger, J. et al., Plasmodium falciparum spermidine synthase in complex with N-(3-aminopropyl)-trans-cyclohexane-1,4-diamine. To Be Published

Release Date

2019-11-20

Peptides

Spermidine synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Spermidine synthase

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