SMTL ID : 6i3f.1

Crystal structure of the complex of human angiotensinogen and renin at 2.55 Angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG.1: 2 residues within 4Å: Chain A: N.14 Chain B: E.134 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.2: 5 residues within 4Å: Chain B: N.75, T.77, Q.94, M.107, R.139 No protein-ligand interaction detected (PLIP)

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: K.30, D.31, K.187, N.383 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.31, A:N.383, A:N.383 Salt bridges: A:K.187 SO4.4: 5 residues within 4Å: Chain A: A.160, Q.161, G.162, R.163, A.164 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.162, A:R.163, A:A.164 SO4.6: 3 residues within 4Å: Chain A: P.369 Chain B: S.52, R.53 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.53 Salt bridges: B:R.53 SO4.7: 3 residues within 4Å: Chain B: V.104, T.105, Q.150 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.105, B:T.105, B:Q.150 SO4.8: 4 residues within 4Å: Chain B: L.216, C.217, S.238, K.241 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.217 Water bridges: B:S.238, B:S.238 SO4.9: 2 residues within 4Å: Chain B: S.291, S.292 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.292 SO4.10: 4 residues within 4Å: Chain B: A.248, K.249, K.250, Y.255 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.250 SO4.11: 3 residues within 4Å: Chain B: E.187, G.188, R.340 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.188 Salt bridges: B:R.340 SO4.12: 4 residues within 4Å: Chain B: P.30, Q.31, T.32, K.62 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.32, B:T.32 Salt bridges: B:K.62 SO4.13: 2 residues within 4Å: Chain B: Y.192, R.333 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.333

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: L.157, A.160, Q.161, S.306, S.435 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.306, A:S.435, A:S.435

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, Y. et al., Structural basis for the specificity of renin-mediated angiotensinogen cleavage. J. Biol. Chem. (2019)

Release Date

2018-12-26

Peptides

Angiotensinogen: A
Renin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensinogen

Renin

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