SMTL ID : 6i3y.1

Crystal structure of the human mitochondrial PRELID1K58V-TRIAP1 complex with PS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

hetero-2-2-mer

Ligands

1 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.1: 3 residues within 4Å: Chain A: F.108, E.121, W.143 No protein-ligand interaction detected (PLIP)

2 x P5S: O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine(Non-covalent)

P5S.2: 13 residues within 4Å: Chain A: N.72, M.74, V.90, V.92, T.109, W.110, N.111, H.114, M.118, V.120, E.122 Chain C: F.158, R.162 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:V.90, A:N.111, A:H.114, A:V.120, A:V.120, C:F.158 Hydrogen bonds: A:T.109 P5S.3: 22 residues within 4Å: Chain A: R.162, N.166, K.169, T.170 Chain C: R.37, Y.38, N.40, Y.42, S.43, H.45, V.70, T.71, N.72, R.73, M.74, V.90, V.92, N.111, H.114, L.117, M.118, V.120 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:V.70, C:V.90, C:V.92, C:V.92, C:H.114, C:L.117, C:V.120 Hydrogen bonds: C:R.37, C:Y.38, C:N.40, A:T.170 Salt bridges: C:H.45, C:H.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miliara, X. et al., Structural determinants of lipid specificity within Ups/PRELI lipid transfer proteins. Nat Commun (2019)

Release Date

2019-03-20

Peptides

PRELI domain-containing protein 1, mitochondrial: AC
TP53-regulated inhibitor of apoptosis 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
F

B
H

D
A

PRELI domain-containing protein 1, mitochondrial

TP53-regulated inhibitor of apoptosis 1