SMTL ID : 6i56.1

Crystal structure of PBSX exported protein XepA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-pentamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: A.16, G.17, A.18 Chain E: A.16, G.17 Ligands: GOL.4, GOL.5 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain E Hydrogen bonds: A:A.16, A:A.18 Water bridges: E:A.18 GOL.2: 4 residues within 4Å: Chain B: A.16, G.17 Chain C: A.16 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.16, C:A.18 GOL.3: 7 residues within 4Å: Chain B: F.8, A.16, G.17, A.18 Chain D: A.16 Ligands: GOL.2, GOL.4 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.18 GOL.4: 8 residues within 4Å: Chain A: K.15, A.16 Chain D: F.8, A.16, G.17, A.18 Ligands: GOL.1, GOL.3 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.16, D:A.18 GOL.5: 5 residues within 4Å: Chain C: K.15, A.16 Chain E: F.8, A.16 Ligands: GOL.1 2 PLIP interactions: 2 interactions with chain E Water bridges: E:A.18, E:A.18 GOL.6: 4 residues within 4Å: Chain E: A.239, S.241, T.242, W.249 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freitag-Pohl, S. et al., Crystal structures of the Bacillus subtilis prophage lytic cassette proteins XepA and YomS. Acta Crystallogr D Struct Biol (2019)

Release Date

2019-11-20

Peptides

Phage-like element PBSX protein XepA: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
C

D
B

E
E

Phage-like element PBSX protein XepA

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