SMTL ID : 6i60.1 (1 other biounit)

Structure of alpha-L-rhamnosidase from Dictyoglumus thermophilum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

monomer

Ligands

8 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 2 residues within 4Å: Chain A: K.355, W.357 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.355 PGE.2: 5 residues within 4Å: Chain A: N.50, K.101, E.103, Y.580, E.583 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.101, A:E.103, A:E.583 PGE.3: 6 residues within 4Å: Chain A: K.225, Q.538, K.539, E.540, E.587, K.591 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.587 PGE.4: 4 residues within 4Å: Chain A: P.109, C.110, K.111, R.191 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.111 PGE.7: 5 residues within 4Å: Chain A: V.159, N.170, T.172, K.256, F.262 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.170, A:K.256 PGE.8: 11 residues within 4Å: Chain A: D.496, R.500, E.502, W.506, D.509, W.561, Y.610, W.613, E.805, M.815, H.820 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.496, A:R.500, A:D.509, A:H.820 PGE.9: 9 residues within 4Å: Chain A: E.158, Y.160, I.173, L.296, H.301, I.304, L.412, T.414, V.416 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.158 PGE.10: 7 residues within 4Å: Chain A: T.772, S.773, Y.774, G.775, D.777, K.926, Y.927 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.777

2 x AE3: 2-(2-ETHOXYETHOXY)ETHANOL(Non-covalent)

AE3.5: 3 residues within 4Å: Chain A: Y.656, E.659, L.660 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.603, A:Y.656, A:E.659 AE3.6: 2 residues within 4Å: Chain A: K.539, Y.555 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.555

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guillotin, L. et al., Biochemical Characterization of the alpha-l-RhamnosidaseDtRha fromDictyoglomus thermophilum: Application to the Selective Derhamnosylation of Natural Flavonoids. Acs Omega (2019)

Release Date

2019-02-06

Peptides

Alpha-rhamnosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-rhamnosidase

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