SMTL ID : 6i61.1

Crystal structure of human ERRg LBD in complex with bisphenol-B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

2 x H3W: bisphenol-B(Non-covalent)

H3W.1: 13 residues within 4Å: Chain A: L.51, L.54, A.55, E.58, M.89, L.92, R.99, Y.109, L.128, N.129, I.132, F.218, F.233 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.51, A:L.54, A:A.55, A:L.92, A:Y.109, A:F.218, A:F.218, A:F.218, A:F.233 Hydrogen bonds: A:E.58, A:R.99 Water bridges: A:R.99 pi-Stacking: A:Y.109 H3W.8: 13 residues within 4Å: Chain B: L.51, L.54, A.55, E.58, M.89, L.92, R.99, Y.109, L.128, N.129, I.132, F.218, F.233 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.51, B:L.54, B:A.55, B:L.92, B:Y.109, B:F.218, B:F.218, B:F.218, B:F.233 Hydrogen bonds: B:E.58, B:R.99, B:Y.109 Water bridges: B:R.99 pi-Stacking: B:Y.109

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.19, S.22, H.23, V.26 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.22, A:S.22 Water bridges: A:K.19, A:K.19 EDO.9: 4 residues within 4Å: Chain B: K.19, S.22, H.23, V.26 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.22, B:S.22 Water bridges: B:K.19, B:K.19

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: E.145, E.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.147 Water bridges: A:K.146 GOL.4: 5 residues within 4Å: Chain A: E.28, Y.98, R.99, F.149 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.28, A:R.99 Water bridges: A:E.28 GOL.5: 6 residues within 4Å: Chain A: K.222, G.225, V.227, P.228, M.229, L.234 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.222, A:G.225, A:M.229, A:M.229 GOL.6: 4 residues within 4Å: Chain A: Y.33, M.35, P.36, D.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.112, A:D.112 GOL.7: 8 residues within 4Å: Chain A: E.28, P.29, E.30, K.31, E.58, V.61, R.99 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.28, A:E.30, A:E.58 Water bridges: A:K.153 GOL.10: 2 residues within 4Å: Chain B: E.145, E.147 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.147 Water bridges: B:K.146 GOL.11: 5 residues within 4Å: Chain B: E.28, Y.98, R.99, F.149 Ligands: GOL.14 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.28, B:E.28, B:R.99 Water bridges: B:E.28 GOL.12: 6 residues within 4Å: Chain B: K.222, G.225, V.227, P.228, M.229, L.234 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.222, B:G.225, B:M.229, B:M.229 GOL.13: 4 residues within 4Å: Chain B: Y.33, M.35, P.36, D.112 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.112 GOL.14: 8 residues within 4Å: Chain B: E.28, P.29, E.30, K.31, E.58, V.61, R.99 Ligands: GOL.11 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.28, B:E.30 Water bridges: B:K.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thouennon, E. et al., Insights into the activation mechanism of human estrogen-related receptor gamma by environmental endocrine disruptors. Cell.Mol.Life Sci. (2019)

Release Date

2019-07-03

Peptides

Estrogen-related receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Estrogen-related receptor gamma

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