SMTL ID : 6i7k.1

Crystal structure of monomeric FICD mutant L258D complexed with MgATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.54 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: D.265 Ligands: ATP.2 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.265, H2O.1, H2O.2, H2O.2

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 19 residues within 4Å: Chain A: T.128, I.131, E.132, V.214, H.217, V.258, H.261, D.265, G.266, N.267, G.268, R.269, R.272, Y.297, Y.298, L.301, E.302, N.305 Ligands: MG.1 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:T.128, A:E.132, A:E.132, A:D.265, A:D.265, A:G.266, A:N.267, A:N.267, A:G.268, A:R.269, A:R.272, A:Y.297, A:Y.297, A:N.305, A:N.305 Salt bridges: A:H.261, A:R.269, A:R.269, A:R.272 pi-Stacking: A:Y.298

1 x EOH: ETHANOL(Non-functional Binders)

EOH.3: 3 residues within 4Å: Chain A: S.1, D.34, F.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Perera, L.A. et al., An oligomeric state-dependent switch in the ER enzyme FICD regulates AMPylation and deAMPylation of BiP. Embo J. (2019)

Release Date

2019-09-25

Peptides

Adenosine monophosphate-protein transferase FICD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenosine monophosphate-protein transferase FICD

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