SMTL ID : 6i81.1

Crystal Structure of the second bromodomain of BRD2 in complex with RT56

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 7 residues within 4Å: Chain A: G.37, L.38, H.39, D.40, Y.83, P.85 Ligands: H7E.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.39, A:D.40, A:Y.83 Salt bridges: A:H.39, A:D.40

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: K.57, D.62, Y.63, E.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.57 Water bridges: A:D.72

1 x H7E: [1-[4-[2-[(4~{S})-6-(4-chlorophenyl)-8-methoxy-1-methyl-4~{H}-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]ethanoylamino]phenyl]piperidin-4-yl]-trimethyl-azanium(Non-covalent)

H7E.3: 13 residues within 4Å: Chain A: W.25, P.26, F.27, V.31, L.36, L.38, C.80, N.84, H.88, D.89, V.90, M.93 Ligands: MES.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.25, A:F.27, A:V.31, A:L.36, A:L.38, A:V.90 Hydrogen bonds: A:N.84, A:N.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Picaud, S. et al., Crystal Structure of the second bromodomain of BRD2 in complex with RT56. To Be Published

Release Date

2019-11-27

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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