SMTL ID : 6i8r.1

Crystal structure of an ancient sequence-reconstructed Elongation factor Tu (node 170)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: H.20, V.21, D.22, H.23, G.24, K.25, T.26, T.27, N.136, K.137, D.139, M.140, S.174, A.175, L.176 Ligands: MG.2 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:D.22, A:H.23, A:G.24, A:K.25, A:T.26, A:T.27, A:T.27, A:N.136, A:K.137, A:K.137, A:S.174, A:A.175, A:L.176 Water bridges: A:T.27, A:S.174, A:S.174 Salt bridges: A:K.25, A:D.139

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.26, D.81 Ligands: GDP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.26, H2O.2, H2O.3, H2O.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Majumdar, S. et al., Crystal structure of an ancient sequence-reconstructed Elongation factor Tu (node 170). To be published

Release Date

2019-11-27

Peptides

Elongation Factor Tu: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Elongation Factor Tu