SMTL ID : 6i9c.1

Structure of the OTU domain of OTULIN G281R mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: W.90, D.191, P.192, G.193, Q.194, R.197 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.191, A:G.193, A:Q.194, A:R.197, A:R.197 Water bridges: A:Q.93 GOL.2: 7 residues within 4Å: Chain A: Y.88, W.90, I.164, Y.167, N.168, P.192 Ligands: GOL.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.168, A:N.168 Water bridges: A:K.87, A:W.90 GOL.3: 3 residues within 4Å: Chain A: E.18, W.19, R.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.20 Water bridges: A:T.23 GOL.4: 9 residues within 4Å: Chain A: N.50, Y.51, L.54, K.156, H.199, L.200, Q.202, G.208, L.209 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.50, A:Q.202, A:Q.202 Water bridges: A:N.50, A:Y.51

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 1 residues within 4Å: Chain A: K.17 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Damgaard, R.B. et al., OTULIN deficiency in ORAS causes cell type-specific LUBAC degradation, dysregulated TNF signalling and cell death. Embo Mol Med (2019)

Release Date

2019-03-06

Peptides

Ubiquitin thioesterase otulin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin thioesterase otulin