SMTL ID : 6id3.1

Crystal structure of H7 hemagglutinin mutant H7-SGPL ( A138S, V186G) from the influenza virus A/Anhui/1/2013 (H7N9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-3-3-mer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.28, T.30, T.309 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.28, A:T.30, A:T.30, A:T.309 NAG.2: 1 residues within 4Å: Chain A: N.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.231 NAG.3: 5 residues within 4Å: Chain B: E.72, K.75, G.78, N.79, N.82 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.72, B:E.72, B:N.82 Water bridges: B:R.85 NAG.4: 3 residues within 4Å: Chain C: N.28, T.30, T.309 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.28, C:T.30, C:T.30, C:T.309 NAG.5: 1 residues within 4Å: Chain C: N.231 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.231 NAG.6: 5 residues within 4Å: Chain D: E.72, K.75, G.78, N.79, N.82 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.72, D:E.72, D:N.82 Water bridges: D:R.85 NAG.7: 3 residues within 4Å: Chain E: N.28, T.30, T.309 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:N.28, E:T.30, E:T.30, E:T.309 NAG.8: 1 residues within 4Å: Chain E: N.231 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.231 NAG.9: 5 residues within 4Å: Chain F: E.72, K.75, G.78, N.79, N.82 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:E.72, F:E.72, F:N.82 Water bridges: F:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin. Cell Rep (2019)

Release Date

2019-11-27

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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