SMTL ID : 6idd.1 (1 other biounit)

Crystal structure of H7 hemagglutinin mutant SH1-AVPL ( S138A, G186V, T221P, Q226L) from the influenza virus A/Shanghai/1/2013 (H7N9)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-trimer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.28, T.30, T.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.28, A:T.309 NAG.2: 5 residues within 4Å: Chain A: E.393, K.396, G.399, N.400, N.403 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.396 Hydrogen bonds: A:E.393, A:K.396 NAG.3: 5 residues within 4Å: Chain B: E.393, K.396, G.399, N.400, N.403 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:K.396 Hydrogen bonds: B:E.393, B:N.403 NAG.4: 3 residues within 4Å: Chain C: N.28, T.30, T.309 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.28, C:T.30 NAG.5: 5 residues within 4Å: Chain C: E.393, K.396, G.399, N.400, N.403 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.393, C:N.403

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Y. et al., Avian-to-Human Receptor-Binding Adaptation of Avian H7N9 Influenza Virus Hemagglutinin. Cell Rep (2019)

Release Date

2019-11-27

Peptides

Hemagglutinin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
G

Hemagglutinin

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