SMTL ID : 6idj.1

Crystal structure of human DHODH in complex with ferulenol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.239, H.242 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.239, A:H.242 SO4.7: 3 residues within 4Å: Chain A: T.255, Q.257, D.258 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.255 SO4.8: 2 residues within 4Å: Chain A: R.240, R.243 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.240, A:R.243 Salt bridges: A:R.243

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: D.305, T.308, Q.309, R.312 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:D.305, A:Q.309 Salt bridges: A:R.312 ACT.3: 4 residues within 4Å: Chain A: H.50, R.51, H.95, N.144 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.144 Salt bridges: A:H.50, A:H.95 ACT.9: 6 residues within 4Å: Chain A: Q.162, A.163, T.166, L.199, A.200, D.201 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.162, A:A.163 Hydrogen bonds: A:T.166, A:L.199

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.4: 24 residues within 4Å: Chain A: A.89, A.90, G.91, K.94, G.113, S.114, N.139, Y.141, N.175, N.206, K.249, T.277, N.278, T.279, S.299, G.300, L.303, V.327, G.328, G.329, L.349, Y.350, T.351 Ligands: ORO.5 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:N.139, A:Y.141, A:Y.350, A:Y.350 Hydrogen bonds: A:A.90, A:K.94, A:S.114, A:S.114, A:N.175, A:K.249, A:K.249, A:N.278, A:G.300, A:G.329, A:Y.350, A:T.351, A:T.351 Water bridges: A:A.90, A:G.328, A:V.330

1 x ORO: OROTIC ACID(Non-covalent)

ORO.5: 12 residues within 4Å: Chain A: K.94, N.139, R.140, Y.141, G.142, F.143, N.206, S.209, N.211, N.278, T.279 Ligands: FMN.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.143 Hydrogen bonds: A:N.139, A:N.139, A:N.139, A:Y.141, A:G.142, A:F.143, A:N.206, A:N.211, A:N.278, A:N.278 Water bridges: A:S.209, A:S.209 Salt bridges: A:K.94

1 x 9AU: 4-oxidanyl-3-[(2~{E},6~{E})-3,7,11-trimethyldodeca-2,6,10-trienyl]chromen-2-one(Non-covalent)

9AU.6: 17 residues within 4Å: Chain A: M.37, L.40, Q.41, P.46, A.49, H.50, A.53, T.57, L.62, F.92, M.105, V.128, R.130, Y.350, L.353, T.354, P.358 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.40, A:L.40, A:Q.41, A:P.46, A:A.49, A:H.50, A:A.53, A:L.62, A:F.92, A:V.128, A:L.353 Hydrogen bonds: A:Q.41, A:R.130, A:R.130 Salt bridges: A:H.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sato, D. et al., Structural and Biochemical Features of Eimeria tenella Dihydroorotate Dehydrogenase, a Potential Drug Target. Genes (Basel) (2020)

Release Date

2019-09-11

Peptides

Dihydroorotate dehydrogenase (quinone), mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dihydroorotate dehydrogenase (quinone), mitochondrial

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