SMTL ID : 6iem.1 (1 other biounit)

Argininosuccinate lyase from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: S.113, S.202, G.203, A.204, L.205, A.206, G.207 Chain B: Q.166, E.377, R.439 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.113, A:S.113, A:A.204, A:L.205, A:A.206, B:Q.166, B:R.439, B:R.439 GOL.4: 6 residues within 4Å: Chain B: S.78, F.79, G.80, L.82, R.94, D.98 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.78, B:G.80, B:G.80, B:R.94, B:R.94, B:D.98, B:D.98

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: A.148, A.149, P.152, A.171, P.447, A.451, L.454 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.148, A:P.447 EDO.5: 8 residues within 4Å: Chain B: L.24, S.25, K.26, Q.327, E.328, E.331 Chain D: L.296, K.300 5 PLIP interactions: 1 interactions with chain D, 4 interactions with chain B Hydrogen bonds: D:K.300, B:Q.327, B:E.331 Water bridges: B:S.25, B:S.27 EDO.7: 3 residues within 4Å: Chain C: P.36, Y.37, T.40 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain D: W.32, F.79, G.80, P.81 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:F.79 EDO.9: 4 residues within 4Å: Chain D: R.131, T.135, R.465, V.469 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.131, D:R.465

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain B: T.28, W.32, G.77, P.81 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.28, B:G.77 PG4.6: 8 residues within 4Å: Chain C: L.138, G.142, A.145, L.454, N.455, G.458, E.459, A.461 No protein-ligand interaction detected (PLIP)

1 x P3G: 3,6,9,12,15-PENTAOXAHEPTADECANE(Non-covalent)

P3G.10: 7 residues within 4Å: Chain D: L.138, G.142, A.145, L.454, N.455, G.458, E.459 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.458

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Paul, A. et al., Structural studies on M. tuberculosis argininosuccinate lyase and its liganded complex: Insights into catalytic mechanism. IUBMB Life (2019)

Release Date

2019-02-20

Peptides

Argininosuccinate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Argininosuccinate lyase

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