SMTL ID : 6ieu.1

The structure of TRIM66 PHD-Bromo domain with unmodified H3 N terminal peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.9, C.12, H.29, C.32 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:C.12, A:H.29, A:C.32 ZN.2: 4 residues within 4Å: Chain A: C.21, C.24, C.47, C.50 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.21, A:C.24, A:C.47, A:C.50

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: I.116, I.117, K.118, R.119, W.153, N.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.118, A:R.119, A:R.119, A:N.154 GOL.4: 4 residues within 4Å: Chain A: C.12, H.29 Chain B: R.8 Ligands: ZN.1 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:N.14, A:S.31, A:S.31 Hydrogen bonds: B:R.8, B:R.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, J. et al., TRIM66 reads unmodified H3R2K4 and H3K56ac to respond to DNA damage in embryonic stem cells. Nat Commun (2019)

Release Date

2019-09-18

Peptides

Tripartite motif-containing protein 66: A
ALA-ARG-THR-LYS-GLN-THR-ALA-ARG-LYS-SER-THR-GLY: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Tripartite motif-containing protein 66

ALA-ARG-THR-LYS-GLN-THR-ALA-ARG-LYS-SER-THR-GLY

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