SMTL ID : 6if3.1

Complex structure of Rab35 and its effector ACAP2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 23 residues within 4Å: Chain B: D.22, S.23, G.24, V.25, G.26, K.27, S.28, S.29, F.39, G.41, S.42, Y.43, T.45, T.46, A.71, G.72, N.126, K.127, D.129, S.156, A.157, K.158 Ligands: MG.2 27 PLIP interactions: 27 interactions with chain B Hydrogen bonds: B:G.24, B:V.25, B:G.26, B:K.27, B:S.28, B:S.29, B:S.29, B:S.42, B:T.46, B:T.46, B:G.72, B:N.126, B:K.127, B:K.127, B:A.157, B:K.158 Water bridges: B:S.28, B:S.28, B:S.28, B:T.46, B:L.73, B:K.127, B:D.129 Salt bridges: B:K.27, B:K.27, B:D.129 pi-Stacking: B:F.39

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain B: S.28, T.46 Ligands: GTP.1 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:S.28, B:T.46, H2O.9, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, L. et al., Rab35/ACAP2 and Rab35/RUSC2 Complex Structures Reveal Molecular Basis for Effector Recognition by Rab35 GTPase. Structure (2019)

Release Date

2019-04-03

Peptides

Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2: A
Ras-related protein Rab-35: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2

Ras-related protein Rab-35

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