SMTL ID : 6ig4.1

Structure of mitochondrial CDP-DAG synthase Tam41, delta 74

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

3 x 3G0: tetracyanoplatinate(II)(Non-covalent)

3G0.1: 10 residues within 4Å: Chain A: Y.72, G.73, S.74, R.174, P.178, F.234, R.239, I.244, K.247, Q.248 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.73, A:R.174, A:R.239, A:Q.248 3G0.2: 2 residues within 4Å: Chain A: Q.108 Ligands: PT.4 No protein-ligand interaction detected (PLIP) 3G0.8: 9 residues within 4Å: Chain B: Y.72, G.73, S.74, R.174, F.234, R.239, I.244, K.247, Q.248 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.73, B:R.174

7 x PT: PLATINUM (II) ION(Non-covalent)(Non-functional Binders)

PT.3: 1 residues within 4Å: Chain A: K.104 No protein-ligand interaction detected (PLIP) PT.4: 1 residues within 4Å: Ligands: 3G0.2 No protein-ligand interaction detected (PLIP) PT.5: 1 residues within 4Å: Chain A: D.98 No protein-ligand interaction detected (PLIP) PT.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PT.7: 3 residues within 4Å: Chain A: C.27, D.279, S.281 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.279 PT.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PT.10: 2 residues within 4Å: Chain B: H.267, H.290 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiao, H. et al., Structures of the Mitochondrial CDP-DAG Synthase Tam41 Suggest a Potential Lipid Substrate Pathway from Membrane to the Active Site. Structure (2019)

Release Date

2019-07-10

Peptides

Phosphatidate cytidylyltransferase, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidate cytidylyltransferase, mitochondrial