SMTL ID : 6ih0.1

Aquifex aeolicus LpxC complex with ACHN-975

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

monomer

Ligands

1 x A5F: N-[(2S)-3-azanyl-3-methyl-1-(oxidanylamino)-1-oxidanylidene-butan-2-yl]-4-[4-[(1R,2R)-2-(hydroxymethyl)cyclopropyl]buta -1,3-diynyl]benzamide(Non-covalent)

A5F.1: 18 residues within 4Å: Chain A: I.18, H.58, E.73, H.74, T.179, F.180, A.181, I.189, G.198, S.199, L.200, T.203, H.226, K.227, D.230, H.253 Ligands: ZN.2, A5U.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.18, A:F.180, A:A.181, A:I.189, A:T.203, A:K.227 Hydrogen bonds: A:H.58, A:T.179, A:T.179 Water bridges: A:K.227, A:K.227

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.74, H.226, D.230 Ligands: A5F.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.74, A:H.226, A:D.230, A:D.230

1 x A5U: methyl (2S)-2-azanyl-3-methyl-3-[(2-methylpropan-2-yl)oxycarbonylamino]butanoate(Non-covalent)

A5U.3: 8 residues within 4Å: Chain A: T.56, N.57, H.58, E.185, K.227, G.252, H.253 Ligands: A5F.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.253 Hydrogen bonds: A:N.57, A:H.58, A:K.227 Water bridges: A:N.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, S. et al., The Complex Structure of Protein AaLpxC from Aquifex aeolicus with ACHN-975 Molecule Suggests an Inhibitory Mechanism at Atomic-Level against Gram-Negative Bacteria. Molecules (2021)

Release Date

2019-01-30

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase