SMTL ID : 6ihk.1

Structure of MMPA CoA ligase in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.23 Å

Oligo State

homo-dimer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: T.185, H.231, G.302, G.303, A.304, A.305, H.324, A.325, W.326, G.327, M.328, S.329, Q.359, D.417, I.429, R.432, K.523 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:T.185, A:G.303, A:H.324, A:G.327, A:S.329, A:S.329, A:Q.359, A:D.417, A:K.523 Water bridges: A:H.231, A:A.305, A:S.329, A:R.432, A:K.523 Salt bridges: A:H.231, A:R.432, A:K.523, A:K.523 pi-Stacking: A:W.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shao, X. et al., Mechanistic insight into 3-methylmercaptopropionate metabolism and kinetical regulation of demethylation pathway in marine dimethylsulfoniopropionate-catabolizing bacteria. Mol.Microbiol. (2019)

Release Date

2019-07-03

Peptides

AMP-binding domain protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

AMP-binding domain protein