SMTL ID : 6ii8.1

Crystal structure of H7 hemagglutinin from A/Anhui/1/2013 in complex with a human neutralizing antibody L4B-18

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.32 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

9 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.28, A.29, T.30 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.28 NAG.2: 1 residues within 4Å: Chain A: N.231 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.231 NAG.3: 4 residues within 4Å: Chain B: E.72, K.75, N.79, N.82 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.72, B:E.72, B:E.72, B:N.82 NAG.4: 3 residues within 4Å: Chain C: N.28, A.29, T.30 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.28, C:T.30, C:T.30, C:T.309 NAG.5: 1 residues within 4Å: Chain C: N.231 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.231 NAG.6: 3 residues within 4Å: Chain D: E.72, N.79, N.82 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:E.72, D:E.72, D:E.72, D:N.82 NAG.7: 3 residues within 4Å: Chain E: N.28, T.30, T.309 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.28, E:T.309 NAG.8: 2 residues within 4Å: Chain E: P.230, N.231 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:P.230 Hydrogen bonds: E:N.231 NAG.9: 3 residues within 4Å: Chain F: E.72, G.78, N.82 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, K.A. et al., Structure-function analysis of neutralizing antibodies to H7N9 influenza from naturally infected humans. Nat Microbiol (2019)

Release Date

2018-10-24

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF
Heavy chain of L4B-18 Fab: GIJ
Light chain of L4B-18 Fab: HKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
J

I
G

J
H

H
K

K
I

L
L

Hemagglutinin

Hemagglutinin

Heavy chain of L4B-18 Fab

Light chain of L4B-18 Fab