SMTL ID : 6iii.1

Crystal structure of an uncharacterized protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x 2PN: IMIDODIPHOSPHORIC ACID(Non-covalent)

2PN.1: 9 residues within 4Å: Chain A: R.91, K.111, R.174, R.181, N.251, D.260 Ligands: AMP.2, MG.3, MG.4 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Y.75, A:Y.75, A:R.91, A:K.111, A:K.111, A:K.111, A:R.174, A:R.174, A:R.181, A:R.181 Water bridges: A:R.91

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 20 residues within 4Å: Chain A: Y.75, Q.79, L.87, G.88, G.90, R.91, S.119, R.120, G.122, D.123, G.124, R.125, R.163, N.248, D.250, N.251, D.260 Ligands: 2PN.1, MG.3, MG.4 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:Y.75, A:Y.75, A:G.88, A:G.90, A:R.91, A:R.91, A:R.120, A:D.123, A:G.124, A:R.125, A:N.248, A:N.251 Water bridges: A:Q.79, A:D.89, A:R.120, A:D.123

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: N.251, D.260 Ligands: 2PN.1, AMP.2 3 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:D.260, H2O.2, AMP.2 MG.4: 3 residues within 4Å: Chain A: D.260 Ligands: 2PN.1, AMP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.260, A:D.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, B., Crystal structure of an uncharacterized protein. To Be Published

Release Date

2019-10-09

Peptides

UPF0061 protein YdiU: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UPF0061 protein YdiU

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